AMCG00006232 (LOC107694105,LOC107737194,LOC107751684,LOC107575376)


Basic Information

Item Value
gene id AMCG00006232
gene name LOC107694105,LOC107737194,LOC107751684,LOC107575376
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 393832 ~ 397899 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006232
ATGGCCTGGCCTCCTGTCCGGCTGTATCCCTGTAGTGATGTGAGCTGCGCCTGGTCACTGGGGAGGGGGCAGCCAGTGAAGGGTGTCCcggggtctgtgtgtgttttgtggggGGCTAGTATTATCCACTTGGTGCTGTCCTCTGTTaacccctccctccccctctccctccccaggcTGGTGTCCGATGGCGGCAGCTCTCTCGGGGGTGTGGGGGGCATGGACTCAGGCTCCTCCGGCCCGTCTGGCCCAGGCAAGCGCATCCGCAAGCCCTCGCTGCTGTTCGAGGGGTTTGAGAGCCCCGCCCTGGCCCCCGGCCATGccagccctgccctgcccccccACGCGACAGCTCAGATGCCCCTGCACGACCCCAGCCGCCCCCCCGGCCGGCTGACCAACCAGCTCCAGTTCCTGCAGAGGGCCATGATCAAGGCGCTGTGGCGGCACCACTTCGCCTGGCCCTTCCACGAGCCTGTGGACGCCAGCAAGCTCAACCTGCCTGATTACCACAAGATCATCAAGCAGCCGATGGACATGGGCACCATCAGGAAGCGCCTGGAGAGCAATTACTACAGGAGCGCCAGCGAGTGCATGCAGGACTTCAACACCATGTTCACCAACTGCTACATCTACAACAAGCCCACCGATGACATCGTGCTGATGGCCCAGTCTCTGGAGAAGGTCTTCCTCCAGAAAGTTGCCCAGATGCCCCAGGAGGAGATTGAGCtggcaccccccaccccccgggGCAAACCAGGGAAGCCGGGCAAGGGCCGCCGGCCAGCCGtGTCCGGAGGGGTGACCACCGCCCACCAGGTGCCCGCAGTGTCCTCGGTGTCCCAGCTGTActcgccccccacccccgacaCACCGGACTCCGCCCTGTCCCCCCCCGCGCAGACGCTCATCACCAAGAGCCTGGGGCCCCCCCACTCGCAGGGCCTGCTGGGATTGCCCCCCACGCAGCCCACGGCCAAGaaGAAGGGCGTGAAGCGGAAGGCCgacaccaccacccccaccacgGTTGCGATGCCGATGACCCCGGGGGGTCTGGGCGTGGGGCTGGGGGGTCCGGGCGGGGGGGACTCCCCTCCCCTCACTCTGCcactgctctcctcctcctcgctggGGGTGGCCGCCGTGGCCGGGGGTGTCgttggggtgggggagggcaaGCTGGGGGCCATGGGGCTGGCGCTGGGAGGCCTGGGCATGGTGGGGGTCCCGGCCAAGATCCCGGCTCGGCGGCGGGAGAGCGGCCGCCCCATCAAGCCCCCCCGCAAGGACCTGCCGGACTCTCCGCGGCAGCACCAGCCCTCGCGGCGCGGCAAGCTGAGCGAGCAGCTGCGGTACTGCGCCGCCGTGCTGAAGGAGCTGCTGAGCAAGAAGCACGCGGCCTGCGCCTGGCCCTTCTACAAGCCCGTGGACGCCTCGGCGCTGGGGCTGCACGACTACCACGACATCATCAAGCACCCCATGGACCTCAGCACCATCAAGaggaaGATGGACGGTCGAGAGTACAGGGACTCTCAGCAGTTCGCGGCCGACGTGCGGCTCATGTTCTCCAACTGCTACAAGTACAACCCCCCCGACCACGACGTGGTGTCCATGGCGCGCAGGCTGCAGGTATGCAGGGGCGCAGAGGGGGGGGTCGTGTCCATGGCGCGCAGGCTGCAGCTCAAACTGTGCAGCACTGTGAGCAACAGTCACAAGACACTGCAGGGTGAGTCAGACGGGGAGGAGCggagagcgagacagagagCAGTAGCACATGAGAGAGAACTGGGAGGAATAAGCTga
>TU135541
CCGGCCAAGATCCCGGCTCGGCGGCGGGAGAGCGGCCGCCCCATCAAGCCCCCCCGCAAGGACCTGCCGGACTCTCCGCGGCAGCACCAGCCCTCGCGGCGCGGCAAGCTGAGCGAGCAGCTGCGGTACTGCGCCGCCGTGCTGAAGGAGCTGCTGAGCAAGAAGCACGCGGCCTGCGCCTGGCCCTTCTACAAGCCCGTGGACGCCTCGGCGCTGGGGCTGCACGACTACCACGACATCATCAAGCACCCCATGGACCTCAGCACCATCAAGaggaaGATGGACGGTCGAGAGTACAGGGACTCTCAGCAGTTCGCGGCCGACGTGCGGCTCATGTTCTCCAACTGCTACAAGTACAACCCCCCCGACCACGACGTGGTGTCCATGGCGCGCAGGCTGCAGGTATGCAGGGGCGCAGAGGGGGGGGTCGTGTCCATGGCGCGCAGGCTGCAGGTACGC

Function

NR:

description
PREDICTED: bromodomain-containing protein 2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006232 True 1803 mRNA 0.67 7 393832 397899
TU135541 False 459 TUCP 0.68 2 395424 395979

Neighbor

gene id symbol gene type direction distance location
AMCG00006230 NA coding downstream 41518 344775 ~ 352314 (-)
AMCG00006227 NA coding downstream 72744 311224 ~ 321088 (-)
AMCG00006228 NA coding downstream 94695 296206 ~ 299137 (-)
AMCG00006229 NA coding downstream 103147 287691 ~ 290685 (-)
AMCG00006221 NA coding downstream 126951 263637 ~ 266881 (-)
AMCG00006238 NA coding upstream 110270 508169 ~ 511193 (-)
AMCG00006240 NA coding upstream 141300 539199 ~ 539936 (-)
AMCG00006242 NA coding upstream 267687 665586 ~ 675760 (-)
AMCG00006239 NA coding upstream 278685 676584 ~ 686559 (-)
AMCG00006244 NA coding upstream 313933 711832 ~ 720393 (-)
G108366 NA non-coding downstream 25208 365278 ~ 368624 (-)
G108365 NA non-coding downstream 115571 270756 ~ 278261 (-)
G108330 NA non-coding downstream 218639 140559 ~ 175193 (-)
G108349 NA non-coding downstream 275433 117137 ~ 118399 (-)
G108329 NA non-coding downstream 354483 33213 ~ 39349 (-)
G108397 NA non-coding upstream 37502 435401 ~ 435621 (-)
G108427 NA non-coding upstream 187643 585542 ~ 712764 (-)
G108451 NA non-coding upstream 373212 771111 ~ 771337 (-)
G108461 NA non-coding upstream 413836 811735 ~ 811963 (-)
G108478 NA non-coding upstream 454385 852284 ~ 855672 (-)
G108379 NA other downstream 50821 333788 ~ 343011 (-)
G108324 NA other downstream 168691 85489 ~ 225141 (-)
AMCG00006241 NA other upstream 81683 479582 ~ 562415 (-)
AMCG00006243 NA other upstream 302636 700535 ~ 701940 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other upstream 328165 726064 ~ 748736 (-)
AMCG00006247 NA other upstream 440956 838855 ~ 874494 (-)
G108708 NA other upstream 728663 1126562 ~ 1134690 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000319_05872448_05880610 BRD2A, BRD2 coding CI01000319 null 5871950 ~ 5880610 (+)