AMCG00006233


Basic Information

Item Value
gene id AMCG00006233
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 547826 ~ 562265 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006233
ATGTCCTGTGAGACGAACATGACACAGTTTGAGTTTGAGTGGGAGCTGGACCAAGATGAACTGTTGTACGTGGATCTGGACAAGAAGGAGGTTGTGCAGAGACTCCCGGAGTTCGCTGAGGAGTGGGGTCCACCAGAGACAGCTGGTTTTGTAGCACAAACACAGGTTAACTGGGAGGCCTGCAAACATAATGTGGTAGCCTTTGCAAAAGGAGAAGGAACTCCAAAAGAGAAGAAAGAGATTCACTTAAACAGAGTGCTAATATTTGTCCAGTCTAACGTGAcggagggagaggtggagatgGAGTGGGACAGAGACGAGCTGTTCTATGTTGACTTTGACAAGCAGCAGGTGGTGCAGAGGCTCCCGGAGTTTGACACACAATGGCACATGGTGCCAAGCTATCCAGCACAAGAAACACAGGAGGTAGATACCATGAAGTATAATCTGAAAGCCCATGCTAAAGGAGAAGGTTTTCCAATGGAAGTGATAGACCCCCCAGTGGCTCGACTGTACCCTGAGGATGATGTGGAGGCGGGGGTCCCCAACACGCTCATCTGCTTCATCACTGACTTCCACCCCCCCGCCATCAGAGTGTCCTGGAGCAGGAACAACGAGCCGCTGACAGAGGGCGTCAGTGAGACCCAGTACTACTCTAACAGCGACTACAGCTTCCGGCTCTTCTCCTACCTGAGCTTCACCCCCCAGCCGGGGGATGTGTACTCCTGCACTGTGGAGCACATCGGCCTGCAGGAGCCCCTCACCCGACTGTGGGAGCCCGAGCTCCAGATGGACTCGGAGGCGAGGGAGACGGCGGTGTGTGCAGTGGGTCTGACCCTGGGGCTGCTGGGAGTGGTGTCTGGGACCATCTTCCTCATCAAGGGCAACAACTGCAACTGAGAGCGGAACAGtgcaaggacacacacacacacacctccgaCAGGCAGAAATCCACTGCTCAGAAAATCATGTCTagcaaaatgttaattatatttgatatattttttgtcatctTGCCAAAATGTTATTTCATGCACCTGGGAAACATTCCAGCACCTACCTTTGTATTATCttatctatttgttttattttgtcaatgtaCTAATTGTAACTGTGGTGAATTATCCCATTTTAGAATGAAGTCTGATTAGCTGCATTTGACTTGTAATCTAAAACTTCATGCTCTGGTGCTCCTGATTCCCCTGCTCTGTACACTCATCCACACTGTGATTCATTTGGTTTAAtgtatattgttcattaaactagtTTACCAATGAGATCTTCTAAGTTTCCTGACCATTCAGCAGAATGGTTTCCATCTCCAGGCATGAAGGTTTACAGTCCAGCAGGTTATTTTCAGGTCTTTAAATTAGCAGCACTTTTAGAGTGAGGTAAAGGCTTCACATAGACATACCAAATTAGACAAAGTTCACATGGGCAACAATAACCTGCTGGACTGTGGACCCTGAGGACTGTAGGAACCTCTGCCCATGAGCACTAGGATGCTGTTAATCTTAGGAGAGTTGTAACAGATTTTCTCAGTTGATTACACACTGTGACTGAAAAAGACACAAAGATCAAAAATTGAACTGTCACCGCCTACTGGCATTTAGGGGCGACACGCTACGCGACCATGCCACCTCCTTTGTTAAATGAGAGCGAACCTCGTTCACTCACACCAATTCTCTCCCTGGGCAGGCTCGACTGGAcaccagaacaccaccacacagacacattttcaacaatagtgatttatttttaaatagctagGACAGGGCACAAAGACTGTACCAGCAAGAAACACAATAAGTGAGGAATTGGGGaactaaatgtataaaacctaaatctgaaactgcctttaatacacTGGACAATAAAACGAATAAAACCCCAACCCAAAATAACACAAGAAATTAGGAAGTATACatacagtgaaaaaaaatatatttgatcccctgctgattttgtacgttagcccactgaaaaagaaattcTCAGGGAGTACATTCTTTTACTGCTGTTTTAAGGACAAGAATATGGTTGTCCAAAGTATGTATTTACTATGTTTGtggtatttaaattaaaaagtgtatttgattttcata

Function

GO: NA

KEGG:

id description
K06752 MHC2; MHC class II antigen

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006233 True 2105 mRNA 0.45 4 547826 562265

Neighbor

gene id symbol gene type direction distance location
AMCG00006235 NA coding upstream 56029 490705 ~ 491797 (+)
AMCG00006224 NA coding upstream 210546 320671 ~ 337280 (+)
AMCG00006225 NA coding upstream 245241 299339 ~ 302585 (+)
AMCG00006226 NA coding upstream 251429 283664 ~ 296397 (+)
AMCG00006223 psb8,LOC107694197,LOC107574275,LOC105888923,LOC105903056 coding upstream 269737 274192 ~ 278089 (+)
AMCG00006234 NA coding downstream 7139 569404 ~ 576257 (+)
AMCG00006237 NA coding downstream 48202 610467 ~ 633814 (+)
AMCG00006252 NA coding downstream 326813 889078 ~ 895444 (+)
AMCG00006250 vps52 coding downstream 334713 896978 ~ 908806 (+)
AMCG00006251 NA coding downstream 362349 924614 ~ 929086 (+)
G108263 NA non-coding upstream 112205 435401 ~ 435621 (+)
G108256 NA non-coding upstream 142486 384397 ~ 405340 (+)
G108252 NA non-coding upstream 142562 397163 ~ 405264 (+)
G108253 NA non-coding upstream 155033 374136 ~ 392793 (+)
G108248 NA non-coding upstream 234413 311554 ~ 313413 (+)
G108312 NA non-coding downstream 145792 708057 ~ 708928 (+)
G108314 LOC106569953 non-coding downstream 165612 727877 ~ 730186 (+)
G108318 NA non-coding downstream 211394 773659 ~ 774039 (+)
G108308 NA non-coding downstream 219760 782025 ~ 782475 (+)
G108322 NA non-coding downstream 227711 789976 ~ 790833 (+)
AMCG00006231 NA other upstream 113921 426976 ~ 433905 (+)
AMCG00006218 NA other upstream 322473 219104 ~ 225353 (+)
AMCG00006205 NA other upstream 366330 175725 ~ 181496 (+)
AMCG00006208 NA other upstream 407168 133988 ~ 140658 (+)
AMCG00006236 NA other downstream 82453 644718 ~ 652140 (+)
G108319 NA other downstream 212544 774809 ~ 791062 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other downstream 284296 846561 ~ 855720 (+)
AMCG00006256 NA other downstream 423608 985873 ~ 1003871 (+)
AMCG00006276 NA other downstream 716195 1278460 ~ 1286052 (+)

Expression


Co-expression Network