Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00006234 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030134.1 |
| NCBI id | CM030134.1 |
| chromosome length | 29342575 |
| location | 569404 ~ 576257 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0002376 | immune system process | biological_process |
| GO:0016020 | membrane | cellular_component |
| id | description |
|---|---|
| K06752 | MHC2; MHC class II antigen |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00006234 | True | 678 | mRNA | 0.55 | 4 | 569404 | 576257 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00006233 | NA | coding | upstream | 7139 | 547826 ~ 562265 (+) |
| AMCG00006235 | NA | coding | upstream | 77607 | 490705 ~ 491797 (+) |
| AMCG00006224 | NA | coding | upstream | 232124 | 320671 ~ 337280 (+) |
| AMCG00006225 | NA | coding | upstream | 266819 | 299339 ~ 302585 (+) |
| AMCG00006226 | NA | coding | upstream | 273007 | 283664 ~ 296397 (+) |
| AMCG00006237 | NA | coding | downstream | 34210 | 610467 ~ 633814 (+) |
| AMCG00006252 | NA | coding | downstream | 312821 | 889078 ~ 895444 (+) |
| AMCG00006250 | vps52 | coding | downstream | 320721 | 896978 ~ 908806 (+) |
| AMCG00006251 | NA | coding | downstream | 348357 | 924614 ~ 929086 (+) |
| AMCG00006249 | LOC106588375 | coding | downstream | 355902 | 932159 ~ 946648 (+) |
| G108263 | NA | non-coding | upstream | 133783 | 435401 ~ 435621 (+) |
| G108256 | NA | non-coding | upstream | 164064 | 384397 ~ 405340 (+) |
| G108252 | NA | non-coding | upstream | 164140 | 397163 ~ 405264 (+) |
| G108253 | NA | non-coding | upstream | 176611 | 374136 ~ 392793 (+) |
| G108248 | NA | non-coding | upstream | 255991 | 311554 ~ 313413 (+) |
| G108312 | NA | non-coding | downstream | 131800 | 708057 ~ 708928 (+) |
| G108314 | LOC106569953 | non-coding | downstream | 151620 | 727877 ~ 730186 (+) |
| G108318 | NA | non-coding | downstream | 197402 | 773659 ~ 774039 (+) |
| G108308 | NA | non-coding | downstream | 205768 | 782025 ~ 782475 (+) |
| G108322 | NA | non-coding | downstream | 213719 | 789976 ~ 790833 (+) |
| AMCG00006231 | NA | other | upstream | 135499 | 426976 ~ 433905 (+) |
| AMCG00006218 | NA | other | upstream | 344051 | 219104 ~ 225353 (+) |
| AMCG00006205 | NA | other | upstream | 387908 | 175725 ~ 181496 (+) |
| AMCG00006208 | NA | other | upstream | 428746 | 133988 ~ 140658 (+) |
| AMCG00006236 | NA | other | downstream | 68461 | 644718 ~ 652140 (+) |
| G108319 | NA | other | downstream | 198552 | 774809 ~ 791062 (+) |
| AMCG00006246 | slc39a7,LOC107395789,LOC106588393 | other | downstream | 270304 | 846561 ~ 855720 (+) |
| AMCG00006256 | NA | other | downstream | 409616 | 985873 ~ 1003871 (+) |
| AMCG00006276 | NA | other | downstream | 702203 | 1278460 ~ 1286052 (+) |
