AMCG00006239


Basic Information

Item Value
gene id AMCG00006239
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 676584 ~ 686559 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006239
CACATGTGTGAATTGAAATCTGGGGGTTTGTGTAGGAGGGTGACAAACAGGCCGCACCAATGAAAGCACTGGTCCCCATCGTTGTCTCACTGGCTGCAGGTTTGTCCATCACCTGGGCTTTGGAAATCAGACACAGGTTTAGGCAGTTAATGTCTTGTGAGACGAACGTCACGCAGTTTGAGTTTGACTGGGAGATGGACCAAGACGAGCTGCTGTACGTGGATCTGGACAAGAAGCAGATTGTGCAGAGACTCCCCGAGTTCGCTGAGCAGTGGTGTCGACCAGAGAGCCTCCTTGCAGAAACACAGATTAACAGGGAGATCTGCAAAACCAATGTGGAATACTTTGCAAGAGAAGCAGGACGTCCACCAGAGAAGAAAGTGGCTCCTCAAACCATGGTTTATGCTGAAAACCTCACGGTTCCGGGGTCAGCTCAACACACTCATCTGCTTTGCCAGTGGCTTTTACCCGATGCCTATAAAGATGTCCTGGACCAAGAACGTCCAGccggtgacagagggagtgtcCCGCAGCCAGCTGTACTCCAATGAAGACTTCACCTTCAGGACCTTCTCCTACCTGACCTTCACCCCGGCGCTGGGAGATGTGTACTCCTGCCGTGTCGAGCACAGAGCTCTGACTGAGCCCGACACCAAGATCTATGTCGTGGACGTGAACACAGAGTCAGACACAAGAGAGACGGCGCTCTGTGGGGCAGGTCTGGCGCTGGGGCTGCTGGGAGTGGCGCTGGGGCTCTTCTTCCTCATCAAGGGCAACCACTGCAACTGAGgcTTTCCCTGCTGAAGACCATGTtgacaataatacataaaacaaattattaaattcaaatatattggTACAAGTGTGAATGAACAttgttataatgtaattgtCTAATAATCCtctatattaaatgttttaattttcctcTTCAGCCAAACAAGTGGCACAGTGTTGCTGCCTTGGCATTACAAAGACAATTATTTCACTAGGATTGTACATTCTTCAAACCATTGCTTTTAAACTAAGCATTGTGACACTGCATTTCTGCTTTTTACTGTAACAGTAACAGAACATATACATCTGTCCCACTTTCACTGCATACAATGGTGTGAGTATGTAGTAATTTTATGATTGATAaccaagaaaaaacatgaatagcTAGTTATTAGAACATTTGGAAACACTTCATTTGAACACCCTTCTATGTAGCCTTCATAACACCTTCATAAAGGCTACATAACACAGTCATAACACAGCCACAAGACATTCATAACCATTTTCCAAATGACATAACAGGCACAGGAGTATTCATAGCACCAGTAGCGGACTGGCCATCTGGATCACCGGAAGAATTCCGGGTTCCAATATCCCTATTTTTCCAGAAAGGtgagattttaatatttattgcaGTATGCAGCATTATGGTAGTTGTGTATGACCCTCTCATGATACATAATTACTTTTGGACATGTCTATTTAAGCAGatatctgcatttttaaattacatttaacagtttaatgttGGGTGGTTGAGTATCTGGGACCGGATCCAGGGCCGATTTTTAGTCCCAGTCTGTCCCTGACACTCATTATGAATTGTGACATAACAATACATGTCACATGAAATCATTCCTCCAGAGTTTGGGggtaaaataatgcatttatagaTACATATAAGACTTAACCCTCTCTTATGGCACATAGGACATATAATGTCCTGTCAGGTGACAGTTGTCATAGGACACCAACAACAATGTGGATTTCGATGGAAGAGAATTGATGCAGACACATTAAATTTTATTGATCAACATGTATTATAACAGAATTATAAGGTGTTATAGGAGTTATAACTCTCCCATTACAGTTCTATGTAAGATTTTGTGCAAGTCAAATAAAGTGATATGAATATGATAAAACA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006239 True 1921 mRNA 0.43 5 676584 686559

Neighbor

gene id symbol gene type direction distance location
AMCG00006242 NA coding downstream 824 665586 ~ 675760 (-)
AMCG00006240 NA coding downstream 136648 539199 ~ 539936 (-)
AMCG00006238 NA coding downstream 165391 508169 ~ 511193 (-)
AMCG00006230 NA coding downstream 324270 344775 ~ 352314 (-)
AMCG00006227 NA coding downstream 355496 311224 ~ 321088 (-)
AMCG00006244 NA coding upstream 25273 711832 ~ 720393 (-)
AMCG00006248 rxrba,rxrb,LOC107729870,LOC107566635,LOC107751683 coding upstream 87915 774474 ~ 785585 (-)
AMCG00006255 NA coding upstream 210419 896978 ~ 900845 (-)
AMCG00006259 NA coding upstream 356303 1042862 ~ 1047510 (-)
AMCG00006260 NA coding upstream 361619 1048178 ~ 1049728 (-)
G108397 NA non-coding downstream 240963 435401 ~ 435621 (-)
G108366 NA non-coding downstream 307960 365278 ~ 368624 (-)
G108365 NA non-coding downstream 398323 270756 ~ 278261 (-)
G108330 NA non-coding downstream 501391 140559 ~ 175193 (-)
G108349 NA non-coding downstream 558185 117137 ~ 118399 (-)
G108451 NA non-coding upstream 84552 771111 ~ 771337 (-)
G108461 NA non-coding upstream 125176 811735 ~ 811963 (-)
G108478 NA non-coding upstream 165725 852284 ~ 855672 (-)
G108480 NA non-coding upstream 171235 857794 ~ 858315 (-)
G108484 NA non-coding upstream 202514 889073 ~ 889802 (-)
AMCG00006241 NA other downstream 114169 479582 ~ 562415 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other downstream 278685 393832 ~ 397899 (-)
G108379 NA other downstream 333573 333788 ~ 343011 (-)
G108324 NA other downstream 451443 85489 ~ 225141 (-)
AMCG00006243 NA other upstream 13976 700535 ~ 701940 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other upstream 39505 726064 ~ 748736 (-)
AMCG00006247 NA other upstream 152296 838855 ~ 874494 (-)
G108708 NA other upstream 440003 1126562 ~ 1134690 (-)
AMCG00006266 NA other upstream 448342 1134901 ~ 1137952 (-)

Expression


Co-expression Network