AMCG00006241


Basic Information

Item Value
gene id AMCG00006241
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 479582 ~ 562415 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006241
ATGTGTGGACGAGACTTCTGGTGCTCCTCTTTTAAGAATCTCAGTGGTGATGATGTAGAGGGAGTGGTTTTTGCTCAGAGCTACGTTTTTAACCAAGAGGAGGTTATTCACTTCGACACCAATATCAAGAAATATGTAGGACGCACCGAATACGGGGTGAGCAATGCAGAGGAGTGGAACAAGGATACAGCCCAGATAGCAGTTTTAGTGGCTGAAAAGGATCGATATTGTAAACACAACGTGAATGTCTTCCGCAATGGCACACTGGACAGGAGAGttGCCCCCACCGTGTGGGTGGGCTCCAGTAAACCAGTGGGCTCCAAGACCCCCAACGTTTTGGTGTGCTACGCCAGCGGCTTCTACCCCCCGCAGATAACGGTCAGCTGGCTGAGGAATGGAGAGGAGGTGAAGGGCATCACCTCTTCAGAGATGCTTCCTGGTGGGGACTGGACCTATCAGGTCCATGTGTACCTGGAGACCCCCACCCAGTCTGGAGAGAAGTACACCTGCAGGGTGCAGCACAGCAGCCTCAGATCTCCCATTGAGGTGGACTGGGGTAATTGCACACCTGAAACATAa
>TU135557
atagactgatcatttctttgtcagtgggcaaacatacaaaatcagcaggggatcaaatacttttttccctcactgtacaccaAACATGTgataatgatcatcaattcaatatgtaggttgaaacataatcattaactgaaacagaaacagctgtgtaggaggaataaaactgtgtgagtctgtctgggattacatgaagagagggaagcaactgaggctgcctaaatccacagaagaacggtggttagttctccaagatgtttgggtcaacctagacaacaaatattgatttgatgtagatttttcttctgttcactcactttgtatttagttaattgataaatataagcTATTAACAtatctaaaacttttgcacagttctgtatattgcatttggaatatattgtactttattaatgaTTCAGATGTAGTACCGAGgctattaatacatacaataattaatacTGCTGTTTTCTATGGGTGTGTTCACAAGTCACAGACTTCCACAATTCTTCCCAGAATCTAAAGACGAATTTCAGGAAACCATTGACTAAATCGGTCAAAGTCTGCACAGAATAACAAAAGTCTGTGTGTCATGCACACCCTCTATCATATGGTGTTCAAGTGTTGATGCAGCAACAAATCTGTGGGCAGCTTGGCCTTACCAAATTTTAAGCTTTATCACTACTCTTTTGTTTTGCAATCTATCCCTGCTTGGCTTGGCTCTGATATTCCTGTATCTTGGTATCATCTTGAAAAAAGTCTGGTCCCTCGCCAATTCGCCGCGGGAGACCGAGTCTGGGTCTACAACCCTTACTGTAAGAAGGGACTGATCTCTAAGCTTGCCCCAGCTTCGGAAGGCCCCTGCGAAGTGCTAGAAGTGTTGGGGGCGGTGTGCTACCAGGTAGAACTGCAGAGGCGACATCAGGTGGTGGTGCTGCACCGCAATCGCCTAGCCCCCTACCAAGCTCACCAGCCCCCTGCACCGCCAGCAGAGAGTGACCCGACAGCCGAGCCGGAGGAGTCGGGGACATTAGACATTGACATTGAAGGGACTGTAAAAAGTTAATCaagtgattattattgttgtgcaTTAATTacgttttgttgtttatttccattttctccatgtctgttttgtatttggtatTCCCCCTGGGTTCTGAATAGCCCCAGCCATTATTTTGCctttaattcagttattttccacTGCTAGAGCTGCCTTTGTAAAGGTGGGTGTTGCATGTGATGAAATAAAGAGTGCTCTACCTAA
>TU135561
ACAGGACGTATACTGGTCCCAACAAGCTAAGACACCTTCGAGCGCATGCAGACGGGTTTAATGGAAGAACAACGGAGGGGTTTGCagatacagaaatataaatgtcaaaCAAATGTGACCTGTGGAATTATAATCCAGTTCTAAACTTGTTGATAACTAATGTTGCACTTCAGGGGCCTCATGCAACTAcattttggggggagggggtggcaCAGTTGgacaacaaattaattatgttaCAAATAgtctatatttaatatttgtatctaCATCGTTAGAGTAATGTAGTAGGGTTGCACTAatggttattgtttttttgacatttttagtTTGAAGTCATTTCACTATATCCGGAAGTCTTTTCATGGTTAAATGACAACTCGTTCTGTGAATTCGCCAGGCA
>TU135562
TCCAGAGCCCAGGTGATGGGCAGCcctgcagacagagacacaaggaGGACCAGTGCCTTCATGTTTCAGCCAGAAGCCCAGGTTCTGTCCATGGAGAGAatgGCTACACATTCCAGTATCTGAATGACTGTAATTTCAGTGGTGATGATGTAGAGGGAGTGGTTTTTGCTCAGAGCTACGTTTTTAACCAAGAGGAGGTTATTCACTTCGACACCAATATCAAGAAATATGTAGGACGCACCGAATACGGGGTGAGCAATGCAGAGGAGTGGAACAAGGATACAGCCCAGATAGCAGTTTTAGTGGCTGAAAAGGATCGATATTGTAAACACAACGTGAATGTCTTCCGCAATGGCACACTGGACAGGAGAGttGCCCCCACCGTGTGGGTGGGCTCCAGTAAACCAGTGGGCTCCAAGACCCCCAACGTTTTGGTGTGCTACGCCAGCGGCTTCTACCCCCCGCAGATAACGGTCAGCTGGCTGAGGAATGGAGAGGAGGTGAAGGGCATCACCTCTTCAGAGATGCTTCCTGGTGGGGACTGGACCTATCAGGTCCATGTGTACCTGGAGACCCCCACCCAGTCTGGAGAGAAGTACACCTGCAGGGTGCAGCACAGCAGCCTCAGATCTCCCATTGAGGTGGACTGGGACTACTCAATGCCCGAGTCTGATAGGAACAAGGTGATCATTGGCGCGTCCGGCCTGGTCCTGGGGCTGGTCATCGCGCTGGCCGGAGGGGTGTTCTACAGGAAGAAGAAATCCGCAGGACGTATACTGGTCCCAACAAGCTAAGACACCTTCGAGCGCATGCAGACGGGTTTAATGGAAGAACAACGGAGGGGTTTGCagatacagaaatataaatgtcaaaCAAATGTGACCTGTGGAATTATAATCCAGTTCTAAACTTGTTGATAACTAATGTTGCACTTCAGGGGCCTCATGCAACTAcattttggggggagggggtggcaCAGTTGgacaacaaattaattatgttaCAAATAgtctatatttaatatttgtatctaCATCGTTAGAGTAATGTAGTAGGGTTGCACTAatggttattgtttttttgacatttttagtTTGAAGTCATTTCACTATATCCGGAAGTCTTTTCATGGTTAAATGACAACTCGTTCTGTGAATTCGCCAGGCA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006241 False 579 mRNA 0.52 3 529054 532720
TU135557 True 1273 lncRNA 0.42 2 503803 562415
TU135561 False 403 lncRNA 0.38 2 479582 480415
TU135562 False 1167 TUCP 0.49 6 479582 546146

Neighbor

gene id symbol gene type direction distance location
AMCG00006230 NA coding downstream 127268 344775 ~ 352314 (-)
AMCG00006227 NA coding downstream 158494 311224 ~ 321088 (-)
AMCG00006228 NA coding downstream 180445 296206 ~ 299137 (-)
AMCG00006229 NA coding downstream 188897 287691 ~ 290685 (-)
AMCG00006221 NA coding downstream 212701 263637 ~ 266881 (-)
AMCG00006242 NA coding upstream 103171 665586 ~ 675760 (-)
AMCG00006239 NA coding upstream 114169 676584 ~ 686559 (-)
AMCG00006244 NA coding upstream 149417 711832 ~ 720393 (-)
AMCG00006248 rxrba,rxrb,LOC107729870,LOC107566635,LOC107751683 coding upstream 212059 774474 ~ 785585 (-)
AMCG00006255 NA coding upstream 334563 896978 ~ 900845 (-)
G108397 NA non-coding downstream 43961 435401 ~ 435621 (-)
G108366 NA non-coding downstream 110958 365278 ~ 368624 (-)
G108365 NA non-coding downstream 201321 270756 ~ 278261 (-)
G108330 NA non-coding downstream 304389 140559 ~ 175193 (-)
G108349 NA non-coding downstream 361183 117137 ~ 118399 (-)
G108427 NA non-coding upstream 23127 585542 ~ 712764 (-)
G108451 NA non-coding upstream 208696 771111 ~ 771337 (-)
G108461 NA non-coding upstream 249320 811735 ~ 811963 (-)
G108478 NA non-coding upstream 289869 852284 ~ 855672 (-)
G108480 NA non-coding upstream 295379 857794 ~ 858315 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other downstream 81683 393832 ~ 397899 (-)
G108379 NA other downstream 136571 333788 ~ 343011 (-)
G108324 NA other downstream 254441 85489 ~ 225141 (-)
AMCG00006243 NA other upstream 138120 700535 ~ 701940 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other upstream 163649 726064 ~ 748736 (-)
AMCG00006247 NA other upstream 276440 838855 ~ 874494 (-)
G108708 NA other upstream 564147 1126562 ~ 1134690 (-)
AMCG00006266 NA other upstream 572486 1134901 ~ 1137952 (-)

Expression


Co-expression Network