AMCG00006243


Basic Information

Item Value
gene id AMCG00006243
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 700535 ~ 701940 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006243
GGGGGTAGTGGTATTGGCCGGGCGGTTTGCCAACGTCTTGCCATCGAAGGCGCCTCAGTGGTGGTGGCAGATGTCAGCGAGGAGTCGGCCAATGAGACGCTGCGGAGCCTGGCGACGGGGGCAGGGGGTGCAGGGGGGCAGCGGCATGTGGCCCTCAGGGTGGACGTGTCCTTGAAAGAGAGTGTGGAGGGATTGGTCACTGGCATACAGtgtgAGTATTTCCGGCCCCCCTGTGTGTGCGTCAGCGCGGCGGGCATCACTGCCGATGACTTCCTGCTGAGGATGGAGGAGAGACACTTCGACAGGGTCACTCAGGTCAACCTCAAGAGCCAGCCGGCCCAGGGGGTCCGTGTCTGGGCAGAGCTGGGTGCTCAGGAGAGCCTCGTGCTGGTAGGACTGGGGCTCTGTGTGTTC
>TU135624
tgtattgtactcgcctctctctctctgtctcctccagGAGGGGGTAGTGGTATTGGCCGGGCGGTTTGCCAACGTCTTGCCATCGAAGGCGCCTCAGTGGTGGTGGCAGATGTCAGCGAGGAGTCGGCCAATGAGACGCTGCGGAGCCTGGCGACGGGGGCAGGGGGTGCAGGGGGGCAGCGGCATGTGGCCCTCAGGGTGGACGTGTCCTTGACTGGCATACAGtgtgAGTATTTCCGGCCCCCCTGTGTGTGCGTCAGCGCGGCGGGCATCACTGCCGATGACTTCCTGCTGAGGATGGAGGAGAGACACTTCGACAGGGTCACTCAGGTCAACCTCAAGG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006243 True 414 mRNA 0.64 3 700535 701901
TU135624 False 343 lncRNA 0.63 3 701479 701940

Neighbor

gene id symbol gene type direction distance location
AMCG00006239 NA coding downstream 13976 676584 ~ 686559 (-)
AMCG00006242 NA coding downstream 24775 665586 ~ 675760 (-)
AMCG00006240 NA coding downstream 160599 539199 ~ 539936 (-)
AMCG00006238 NA coding downstream 189342 508169 ~ 511193 (-)
AMCG00006230 NA coding downstream 348221 344775 ~ 352314 (-)
AMCG00006244 NA coding upstream 9892 711832 ~ 720393 (-)
AMCG00006248 rxrba,rxrb,LOC107729870,LOC107566635,LOC107751683 coding upstream 72534 774474 ~ 785585 (-)
AMCG00006255 NA coding upstream 195038 896978 ~ 900845 (-)
AMCG00006259 NA coding upstream 340922 1042862 ~ 1047510 (-)
AMCG00006260 NA coding upstream 346238 1048178 ~ 1049728 (-)
G108397 NA non-coding downstream 264914 435401 ~ 435621 (-)
G108366 NA non-coding downstream 331911 365278 ~ 368624 (-)
G108365 NA non-coding downstream 422274 270756 ~ 278261 (-)
G108330 NA non-coding downstream 525342 140559 ~ 175193 (-)
G108349 NA non-coding downstream 582136 117137 ~ 118399 (-)
G108451 NA non-coding upstream 69171 771111 ~ 771337 (-)
G108461 NA non-coding upstream 109795 811735 ~ 811963 (-)
G108478 NA non-coding upstream 150344 852284 ~ 855672 (-)
G108480 NA non-coding upstream 155854 857794 ~ 858315 (-)
G108484 NA non-coding upstream 187133 889073 ~ 889802 (-)
AMCG00006241 NA other downstream 138120 479582 ~ 562415 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other downstream 302636 393832 ~ 397899 (-)
G108379 NA other downstream 357524 333788 ~ 343011 (-)
G108324 NA other downstream 475394 85489 ~ 225141 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other upstream 24124 726064 ~ 748736 (-)
AMCG00006247 NA other upstream 136915 838855 ~ 874494 (-)
G108708 NA other upstream 424622 1126562 ~ 1134690 (-)
AMCG00006266 NA other upstream 432961 1134901 ~ 1137952 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other upstream 509346 1211286 ~ 1216184 (-)

Expression


Co-expression Network