AMCG00006246 (slc39a7,LOC107395789,LOC106588393)


Basic Information

Item Value
gene id AMCG00006246
gene name slc39a7,LOC107395789,LOC106588393
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 846561 ~ 855720 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006246
GCCGCTAATACACAACAGAGGCGACAGACAGGGACGCGAACTAGGAAGCGGGTTGTTTTAGCAATTGTTGCATTAATCTCATCAAGAAAACACACTCGTCTCAACCGGTCAGAGGAGCAGCAGCCTTTACTGTACCCTGgggagaCCATGACGGTGGCAGACAGACGCAGTGCCCCCATGTCAGTTACACTCTGTGCCCTGGGGGTGGTGCTGCTCACTCTGGGCTCCCTCATACAGCCTGGCCATGGCCACTCCCACCACGACCACGGTCACGGTCATGGCCATGCGCACCACGGCCATGGCCACGGCCACTCCCATGGAGGTGCCGGCGGGTGCCACGGCCATTCTCACGGGGGCCGGGATGAGGGGGTGAAGATGCACCACGGAGCCAGCAAGTGGAGCGCAGAGGCCAACCTGCCCTCGCAGCAGGACACGCAGGACGCACTGCACGACGCTCTGCTGCAGGAGCTACAGAGGGAGACGCATCCTCACCCTCACGAGGAAGAGGAGCCACACCAGCACGGCCACGATGATGTGCAcgctcactctcactctcactctgaGCCCCACTCTCACTCACATGGGGGAGAGAGGGTGAAGAGGGAGGTAGAGGAAAAGAGGACATCGGTGGAACTGTGGACtcagGCCATTGGTGCCACCTTGCTGATCAGCGCTGCTCCGTTCTTCATCCTGTTCCTGATCCCGGTCCAGTCCAACACCGACCAGCACCAGAGCCTGCTCAAGATCCTGCTCAGCTTCGCCTCCGGGGGGCTGCTGGGTGATGCCTTCCTGCACCTCATTCCCCACGCACTGGagcctCATTCTCACCACGGAAACGAGGGACATGACCACTCACATGAAAGTGTGTCACATGACCATGACCATGGCCACGGCCACTCCCACTCAGGGGGTGCTCACGGTCACATGATGTCAGTGGGGCTGTGGGTCTTGGGCGGCATTGTGGCATTCTTGGTCGTGGAGAAGTTCGTCCGGCTGCTGAAGGGGGGGCACAGCCACGGCCACGGACACTCCCATTCCCACGGAGCCCCAAAAGCAAAGGAGAGCTCAGgtgaggaggaggtggagaaggagaaagggaaggggaaggggaaggaaaCTGCAAACAACAAGGTGCTGAAGATGGTGAAGCCGGAGGGAGAGCCGCAGTCAGCCACCATCCTGCTGCACGAGGTGCCCCACGAGATCGGAGACTTCGCCATCCTGGTGCAGTCGGGATGTACCAAGAAGAAGGCCATGTGTCTCCAGCTGCTCACGGCTCTGGGCGCGCTGGCGGGCACCGCCTGCTCCCTCTTGGCGGAGGGCGTGGGGGCGGCGGCCACCTCCTGGATCCTGCCCTTCACGGCGGGGGGGTTCGTGTACATCGCCACGGTCACGGTGCTGCCCGAGCTGCTGGCCAGCCGGTCCGGGCCGGTCCAGTCGGTGCTGGAGATCCTGGCTCTGCTCATGGGCGTCTGGATGATGGTGCTGATCGCGGAaggagTAAAAATTGGAGTGAGaatgagaatgagagagagagacagagggagacgggagactgtgtgtgagtgtatacacACGCGTTGTCTTATCACAGATATGGGACAGATTCTCTCTCTCGgatgctccctctctcctgcatcAGTGTGCCCCTGTCTCCCCCTCGTGTCCCGGAGGTGTCAGTGCAGGTATGTAGAGAGGAGGGACCAGTGACCGTCAGGCACAGTCTATTCCAGCCCAGACAGAGACAGTCTAGTCTATCAGTCTCATTTAGTCAGTTTAGTTCCtctgttatttgtgtttggtttgagTTTGGGTCTGTGTACAttcttgtctttttaaaaataaaaagtggggaaaaaagtgaacGTGTTTCCTGTCTTTAGGTTGTGGAGTTGGCTG
>TU135656
AGGAACTCTCGCGAGAGTTGGTGCCAGCACTTTCTGCCACGTCTGTTTGGCTCGCCGCTAATACACAACAGAGGCGACAGACAGGGACGCGAACTAGGAAGCGGGTTGTTTTAGCAATTGTTGCATTAATCTCATCAAGAAAACACACTCGTCTCAACCGGTCAGAGGAGCAGCAGCCTTTACTGTACCCTGgggagaCCATGACGGTGGCAGACAGACGCAGTGCCCCCATGTCAGTTACACTCTGTGCCCTGGGGGTGGTGCTGCTCACTCTGGGCTCCCTCATACAGCCTGGCCATGGCCACTCCCACCACGACCACGGTCACGGTCATGGCCATGCGCACCACGGCCATGGCCACGGCCACTCCCATGGAGGTGCCGGCGGGTGCCACGGCCATTCTCACGGGGGCCGGGATGAGGGGGTGAAGATGCACCACGGAGCCAGCAAGTGGAGCGCAGAGGCCAACCTGCCCTCGCAGCAGGACACGCAGGACGCACTGCACGACGCTCTGCTGCAGGAGCTACAGAGGGAGACGCATCCTCACCCTCACGAGGAAGAGGAGCCACACCAGCACGGCCACGATGATGTGCAcgctcactctcactctcactctgaGCCCCACTCTCACTCACATGGGGGAGAGAGGGTGAAGAGGGAGGTAGAGGAAAAGAGGACATCGGTGGAACTGTGGACtcagGCCATTGGTGCCACCTTGCTGATCAGCGCTGCTCCGTTCTTCATCCTGTTCCTGATCCCGGTCCAGTCCAACACCGACCAGCACCAGAGCCTGCTCAAGATCCTGCTCAGCTTCGCCTCCGGGGGGCTGCTGGGTGATGCCTTCCTGCACCTCATTCCCCACGCACTGGagcctCATTCTCACCACGGAAACGAGGGACATGNNNNN

Function

symbol description
slc39a7 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within zinc ion homeostasis. Predicted to be located in Golgi apparatus and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; gill; muscle; and optic cup. Orthologous to human SLC39A7 (solute carrier family 39 member 7).

NR:

description
PREDICTED: zinc transporter SLC39A7

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG:

id description
K14713 SLC39A7, KE4, ZIP7; solute carrier family 39 (zinc transporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006246 True 1899 mRNA 0.59 9 846614 855720
TU135656 False 905 TUCP 0.60 4 846561 848772

Neighbor

gene id symbol gene type direction distance location
AMCG00006237 NA coding upstream 212747 610467 ~ 633814 (+)
AMCG00006234 NA coding upstream 270304 569404 ~ 576257 (+)
AMCG00006233 NA coding upstream 284296 547826 ~ 562265 (+)
AMCG00006235 NA coding upstream 354764 490705 ~ 491797 (+)
AMCG00006224 NA coding upstream 509281 320671 ~ 337280 (+)
AMCG00006252 NA coding downstream 33358 889078 ~ 895444 (+)
AMCG00006250 vps52 coding downstream 41258 896978 ~ 908806 (+)
AMCG00006251 NA coding downstream 68894 924614 ~ 929086 (+)
AMCG00006249 LOC106588375 coding downstream 76439 932159 ~ 946648 (+)
AMCG00006253 NA coding downstream 95202 950922 ~ 959903 (+)
G108322 NA non-coding upstream 55728 789976 ~ 790833 (+)
G108308 NA non-coding upstream 64086 782025 ~ 782475 (+)
G108318 NA non-coding upstream 72522 773659 ~ 774039 (+)
G108314 LOC106569953 non-coding upstream 116375 727877 ~ 730186 (+)
G108312 NA non-coding upstream 137633 708057 ~ 708928 (+)
G108496 NA non-coding downstream 77795 933515 ~ 933825 (+)
G108513 NA non-coding downstream 211316 1067036 ~ 1067725 (+)
G108515 NA non-coding downstream 214607 1070327 ~ 1070771 (+)
G108516 NA non-coding downstream 215574 1071294 ~ 1071772 (+)
G108519 NA non-coding downstream 307144 1162864 ~ 1193441 (+)
G108319 NA other upstream 55499 774809 ~ 791062 (+)
AMCG00006236 NA other upstream 194421 644718 ~ 652140 (+)
AMCG00006231 NA other upstream 412656 426976 ~ 433905 (+)
AMCG00006218 NA other upstream 621208 219104 ~ 225353 (+)
AMCG00006205 NA other upstream 665065 175725 ~ 181496 (+)
AMCG00006256 NA other downstream 130153 985873 ~ 1003871 (+)
AMCG00006276 NA other downstream 422740 1278460 ~ 1286052 (+)
AMCG00006275 NA other downstream 431109 1286829 ~ 1315558 (+)
G108585 NA other downstream 494663 1350383 ~ 1429987 (+)
G108626 rps5,LOC107086176 other downstream 781677 1637397 ~ 1814610 (+)

Expression


Co-expression Network