AMCG00006247


Basic Information

Item Value
gene id AMCG00006247
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 838855 ~ 874494 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006247
agtgtgTTTTGTACTCCAGGCTGCACTCTGTTAGGCCCTGGACACACTGTGATCTCCGCTCTCTCTGGAGCCTCAGTCCTCCTGCCCTGCTCCTGCACTGACACTCACTCTCAGCCCAAGAGACTCGGGTGGAGTCTCCTCTCAGGACTGAATGCCACTGAGATAGTGAAGTGTGATGGGACCGTCCACTCCAGCTACAGAGACAGAGTGCAGTTGTTTAACTCTGACTCCCCTGGaaacctctctctcctcctctctcacctgACTGAGAGGGACCAGGGTGACTACAGGTGTGATGTCAGTTTGAGGAGCTTCAGAGACATCAGCCTCACTGTGACAGAGCAACAACCAAGACAAACAGCAACACCAGCGACCACAACTGCAGCGGCTCTGATGTTCTCAGGAGTGGGGCTGGCGGCTCTGACGTTCCTCCTGGCCACTGCAGCTGCTGTCAGAGCAaccagagagaaagacagGACAGCAGCAGAAGAATTTGCACTGAAGAGGAGCGGACACCCCCGAACTGAGGAGgaaatacagaacaatacagcttaattaaatactgcaatacatattaaacatatacTGCCATACAGCTTAAATACATTCTGCAACACATATGACATATATACCCTAATATAGCTTAAATATATACTGCTAATCTcgaatttaaactgaaatgtattgtatataggTACTGCAATagttatttcataattattgaATAATTACCTTCATCTGTCTCCTGTTTCTCTGTTTCATCAACGCCATACCTTTATTCCAAAGTCTTGTCTGCACTTAGCAGCATTTCCGAGCTTGTTTTCCCTCTTAGTGTTTTGACAATTAGGGTTTactgacccttgcctgttttTTGATGTTCTTTCTGCCTGATCGAACGACCCTACCCCTGATATAACGACCACTCTTTCTTGTTTTGCCCGCATTGCCCTGTTCACTGGTATTCGACCCACGTATGTTATTGTCCTGCCTTTTGCCCGCACCCGAGTCCTCCATTCCCCTGGCTGTTCCTGTGACCCGAGTCTTTACAACATTTGTGTCTCTGATAAGTCCGGCTTGAGAGTCAGGTTGATGTCTGCTGAAGCACGTAACTCAAGGGCAGCTCACTCTGGGGTTTGATTCGTTATTGCAAGATGTTACTCTTTATCTAATCACTGTTTCTTTGTCTGTACAAGTGTATTAAACTCCTGCTCAGAGGAGTCAGAGAGCAATGTCACGCTGCCAGGGtactgtttctctctccatgtgCATCAATAAAGAATTAACTTGATCAACACGACA
>TU135674
gtgtgTTTTGTACTCCAGGCTGCACTCTGTTAGGCCCTGGACACACTGTGATCTCCGCTCTCTCTGGAGCCTCAGTCCTCCTGCCCTGCTCCTGCACTGACACTCACTCTCAGCCCAAGAGACTCGGGTGGAGTCTCCTCTCAGGACTGAATGCCACTGAGATAGTGAAGTGTGATGGGACCGTCCACTCCAGCTACAGAGACAGAGTGCAGTTGTTTAACTCTGACTCCCCTGGaaacctctctctcctcctctctcacctgACTGAGAGGGACCAGGGTGACTACAGGTGTGATGTCAGTTTGAGGAGCTTCAGAGACATCAGCCTCACTGTGACAGAGCAACAACCAGGACAAACGACAACACCAGCGACCACAACTGCAGCGGCTCTGATGTTCTCAGGAGTGGGGCTGGCGGCTCTGACGTTCCTCCTGGCCACTGCAGCTGCTGTCAGAGcgaccagagagagagacagGACAGCAGCAGAAGAATTTGCACTGAAGAGGAGCGGACACCCCCGAACTGAGGAGgaaatacagaacaatacagcttaattaaatactgcaatacatattaaacatatacTGCCATACAGCTTAAATACATTCTGCAACACATATGACATATATACCCTAATATAGCTTAAATATATACTGCTAATCTcgaatttaaactgaaatgtattgtatataggTACTGCAATagttatttcataattattgaATAATTACCTTCATCTGTCTCCTGTTTCTCTGTTTCATCAACGCCATACCTTTATTCCAAAGTCTTGTCTGCACTTAGCAGCATTTCCGAGCTTGTTTTCCCTCTTAGTGTTTTGACAATTAGGGTTTactgacccttgcctgttttTTGATGTTCTTTCTGCCTGATCGAACGACCCTACCCCTGATATAACGACCACTCTTTCTTGTTTTGCCCGCATTGCCCTGTTCACTGGTATTCGACCCACGTATGTTATTGTCCTGCCTTTTGCCCGCACCCGAGTCCTCCATTCCCCTGGCTGTTCCTGTGACCCGAGTCTTTACAACATTTGTGTCTCTGATAAGTCCGGCTTGAGAGTCAGGTTGATGTCTGCTGAAGCACGTAACTCAAGGGCAGCTCACTCTGGGGTTTGATTCGTTATTGCAAGATGTTACTCTTTATCTAATCACTGTTTCTTTGTCTGTACAAGTGTATTAAACTCCTGCTCAGAGGAGTCAGAGAGCAATGTCACGCTGCCAGGGtactgtttctctctccatgtgCATCAATAAAGAATTAACTTGATCAACACGACACCCTGAATGAACCCTGAGTTTTCCTGCTTATTGAGGCCTTATTCCCCCTTCCCCTTTGCTCCACACTCACAGGACTCAG
>TU135675
gtgtgTTTTGTACTCCAGGCTGCACTCTGTTAGGCCCTGGACACACTGTGATCTCCGCTCTCTCTGGAGCCTCAGTCCTCCTGCCCTGCTCCTGCACTGACACTCACTCTCAGCCCAAGAGACTCGGGTGGAGTCTCCTCTCAGGACTGAATGCCACTGAGATAGTGAAGTGTGATGGGACCGTCCACTCCAGCTACAGAGACAGAGTGCAGTTGTTTAACTCTGACTCCCCTGGaaacctctctctcctcctctctcacctgACTGAGAGGGACCAGGGTGACTACAGGTGTGATGTCAGTTTGAGGAGCTTCAGAGACATCAGCCTCACTGTGACAGAGCAACAACCAGGACAAACGACAACACCAGCGACCACAACTGCAGCGGCTCTGATGTTCTCAGGAGTGGGGCTGGCGGCTCTGACGTTCCTCCTGGCCACTGCAGCTGCTGTCAGAGcgaccagagagagagacagGAGAACAGAAGAAGAGTTTGCACTGAATAGGAGAGGACACCCCCCCACTGAGACTGAGGAGGAAATACAGAGCAATACAGCTTAATTAAATACTGCACTATATACTgcaatacatattaaacataCTGCAATACAGCTTAAATACATTCtgcaatacatattaaatatatacgcTAATATAGCTTAAATATATACTGCTAATCtcacatttaaactgaaatgtattgtatataggtactgcaatagttattttttaaactgcaatgcATATTAAATTTATACTGCTTGAGAGCGTTCCCCCGAGGTCTGTTAGTGCACTGTGCCCCAGTGCATCATGGGGACTGTAGTTCCTCTGACGCAGAGCAGTGTAgaagtacattttgaaagactTGTGTTGCGTGCGTGTGCTCTGTCTGTCCCCTGCTATCCCTATTGTACGCAGGTGTCccgctgtgattggctctcGTCCCCGTCACTCAACTCCGCTGTCCCGTGCTGTTCCTGTCCAATCAGATGTCTCCAACTACTGCTTAAATACCCCGTCATTCCGCCATTACGGGAGACTACCATTGCAACGACGTTTCGTGTTGCCACCCTGTCTGTTTGAGTAAAATACCTTTGTGACTGATTGTGTTTGCTTGTGTAAATATCCACTGTTTCTTCTGTCTTGTTTCTGTTCACATTGTATTGTGCTCTGTTCAGGGGAGAAGGGGTAGATAGGTGAGATACCCATGGGTTTACACGGGGACACGTAGGGATGTATGTTGTCTAGCACATTAGGTATTTAGGTAGGGGGCGGTGATCACCCCTCTGTACTAGTTGTTAGGTTTAGATAGTTTAGTTAGTGTAGCTAGTTAGGGTCGTCCTACAAATACAAGTCAGGTAGTGGTTTACTCTTCTAGACTAGCTtagataggttttgttttgtttcagtgtttcctctgtgtatttgttcattatttgtatcattatcatcacGTGTTTCTGTGTACTGTACATACTTGTATATATTCCCCTcccattgtaaataaacccttcttaaatatatatatataaagaagggtttatttacaatgggGAGGGGAGTATAATCTTATTGATATTCTGTTCGAGGACACTGAATGACGCTCAGATAGAAAAGGAATgccttttattgttattattattattattattattattattattattattattattattattattattattatttcttggcagacgcccttacccagggtgacataagtgtaaaacaaagtgcaaaatacagtgaagtacaaggcatcaatcattacaaactcaattaaactaaaacatagcaatttaaaataatacattttacaaattccaatttacaattta
>TU135676
gtgtgTTTTGTACTCCAGGCTGCACTCTGTTAGGCCCTGGACACACTGTGATCTCCGCTCTCTCTGGAGCCTCAGTCCTCCTGCCCTGCTCCTGCACTGACACTCACTCTCAGCCCAAGAGACTCGGGTGGAGTCTCCTCTCAGGACTGAATGCCACTGAGATAGTGAAGTGTGATGGGACCGTCCACTCCAGCTACAGAGACAGAGTGCAGTTGTTTAACTCTGACTCCCCTGGaaacctctctctcctcctctctcacctgACTGAGAGGGACCAGGGTGACTACAGGTGTGATGTCAGTTTGAGGAGCTTCAGAGACATCAGCCTCACTGTGACAGAGCAACAACCAAGACAAACAGCAACACCAGCGACCACAACTGCAGCGGCTCTGATGTTCTCAGGAGTGGGGCTGGCGGCTCTGACGTTCCTCCTGGCCACTGCAGCTGCTGTCAGAGCAaccagagagaaagacagAAGAAGAGTTTGCACTGAAGAGGAGAGGACGCCCCCCCACTGAGACTGAGGAGGAAATACAGAGCAATACAGCTTAATTATATACTGCACTATATACCACAgtacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006247 False 1299 mRNA 0.46 3 869356 874494
TU135674 False 1377 lncRNA 0.47 3 869277 874493
TU135675 True 1843 lncRNA 0.42 3 842324 874493
TU135676 False 582 lncRNA 0.53 3 838855 874493

Neighbor

gene id symbol gene type direction distance location
AMCG00006248 rxrba,rxrb,LOC107729870,LOC107566635,LOC107751683 coding downstream 53270 774474 ~ 785585 (-)
AMCG00006244 NA coding downstream 118462 711832 ~ 720393 (-)
AMCG00006239 NA coding downstream 152296 676584 ~ 686559 (-)
AMCG00006242 NA coding downstream 163095 665586 ~ 675760 (-)
AMCG00006240 NA coding downstream 298919 539199 ~ 539936 (-)
AMCG00006255 NA coding upstream 22484 896978 ~ 900845 (-)
AMCG00006259 NA coding upstream 168368 1042862 ~ 1047510 (-)
AMCG00006260 NA coding upstream 173684 1048178 ~ 1049728 (-)
AMCG00006258 psb7,LOC106569939,LOC106588382 coding upstream 193560 1068054 ~ 1073294 (-)
AMCG00006265 NA coding upstream 282233 1156727 ~ 1160200 (-)
G108461 NA non-coding downstream 26892 811735 ~ 811963 (-)
G108451 NA non-coding downstream 67518 771111 ~ 771337 (-)
G108427 NA non-coding downstream 126091 585542 ~ 712764 (-)
G108397 NA non-coding downstream 403234 435401 ~ 435621 (-)
G108366 NA non-coding downstream 470231 365278 ~ 368624 (-)
G108484 NA non-coding upstream 14579 889073 ~ 889802 (-)
G108491 NA non-coding upstream 33396 907890 ~ 909028 (-)
G108655 NA non-coding upstream 59021 933515 ~ 933825 (-)
G108664 NA non-coding upstream 78798 953292 ~ 958678 (-)
G108689 NA non-coding upstream 165724 1040218 ~ 1101292 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 90119 726064 ~ 748736 (-)
AMCG00006243 NA other downstream 136915 700535 ~ 701940 (-)
AMCG00006241 NA other downstream 276440 479582 ~ 562415 (-)
AMCG00006232 LOC107694105,LOC107737194,LOC107751684,LOC107575376 other downstream 440956 393832 ~ 397899 (-)
G108379 NA other downstream 495844 333788 ~ 343011 (-)
G108708 NA other upstream 252068 1126562 ~ 1134690 (-)
AMCG00006266 NA other upstream 260407 1134901 ~ 1137952 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other upstream 336792 1211286 ~ 1216184 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 462693 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 470022 1344516 ~ 1637731 (-)

Expression


Co-expression Network