AMCG00006256


Basic Information

Item Value
gene id AMCG00006256
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 985873 ~ 1003871 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006256
ATGGTGACTGCTctgtgtctgctgctgctgggctgTGCTGCCAGGACTGTGTGCGGAGAGGAGTTCCTGGTGCTGGCCCCCAATGTGTTCCATGTGGGTTTGCCAGAGAAGGTGTGGGTGCAGGTGGCCCCCGATGCCTCCCGGCGCCAGGTGTCGGTGTACCTGGAGGACGAGGTGACGCAGAGGAGGGTGACCGAGACGAAGGAGATATCGCTGGGGGGCGGCACTGCCATTCAGAGTGTCACTGTGGAGGTGCTGTCTGACAGGACGTCTGACCTGCAGTTCGGCTCCGTGACGCCCTACCTGCTGCTGGTCACTGAGATCCAGCCCAGGGACAGGAAGGTGTGCAGGGTGCTGCTGTCTCAGGACCGCGGACACATCTTCATTCAGACGGACCAGCCCATCTACACCCCCACACAGACAGTGCTGTTCCGGGTCTTCACCATGGATCACGCCATGAGGCCGGCCAGCCGCTCCTTCACCTTGTCTGTGCTGaacGCGGGGGGGAACCGGGTGAAGGTGGACACAGTGACGAGTAACAGGGACGGCCTGTACTACAGCAAAGTGCACATCCCCGACGTCTCACAgccagGCGTGTGGCGAATCACAGCCCAGTACAGCGGAGCTCAGAACAGGACAGCGAGCCGCGAGTTTGAGGTGAAGAAGTTTGtgttgccCAGCTTCGAAGTGTCCATCAAACCAGGTCGGCTCTTCTACAAGGTAGACGAGAAGGACTTCAGCTTCCGAGTCATGGCCCAgttCTCCTATGGTCAGCCAGTCCAGGGCTCGGCTCATGTTCGTTTCGCTGTGACTGATGAGTCTGGAGAGAACACCTTCATCAGGGGCCTTGAGATGGAGAGCAGCCGGCCGCTGGCGGAGCTCAGCGGAGACTCTCTGTACATCGCCACCACCGTCATCGAGACCGCCaGTGGGGAGGTGCAGGAGGCTGATGTCAAGGTGCCTCTGGTCTCCACTCAGTTCTCAGTGGATCTCTCTCAGACGCGCCGGCACTATGTTCCCGGGGGCCCCCTCCGCATCTCTGTGAATGTGACCCCTGACCTCATCCCTGCCTTCCGTCTGATTGGCTACTACACAACCTCTGGCGGTGAGGTCATCGCTGACTCAGTCTGGATCGACGTCAAGGACAAGTGTGAGGgcgaggtGATGGTGTCCACTGACAGGCAGACGTACAGCCCAGGCAGCATGGCGAAGCTCTCCGTGTCCGGCGATGGGGCGAGTGGCCGTCTGGCCCTGCTGTTGGTGGACAAGGCCGTGTACGGAATGAAGAGGGACAACAAGCTCACACCCAGAGAGGTGTTCTCTGCTCTGGGCTCGTATGATCTGGGCTGTTCGTTCGGAGGCGGCGCCAACGCGTCCAGGGTCTTCAGTGACGCCGGGGTCAGCATCATCTCCCCATCCCTCATCTCCCCCCAGAGGAaagGGTTCGGCTGTGAGGGCGGGTTCAGACGATACCGCCGCTCCCTCAAACTGCAGCAGAAGATGATGTCCACAGtgaacaGTTACTCAGACCCCGCTCTGCGTCGCTGTTGCCGCGACGGCTTCACTCTGATCCCCATGAAGCTCTCTTGCTCCGAGCGTGCTCAGAGGGTCTCCAGCAGGAAGACGGAGAACAAGAAATGTGCCGCCGCCTTCCTGCGCTGCTGCCAGGAAGGGGTGGAGCTCAGGGCCAAGATGGGACGCAGGACCACCCTGGGCAGGAggCTGTGTGTCAGCAACCCAGTGGAGGTGCATGTTTTTAAGGATCTGTTTGTGTCAGTGCGACTGCCCTACTCTGTCCGGCGCTTCGAGCAGCTGGAGGTCAGAGCGGTCATCTACAGCTACGTGGACACTGAGCGGCAGGTACTTACCCCCtggtgtctgtccctctgtccctctgagTGTGTGTCTGGCGCCCCAGcgtgttgtgctgtgtgtttggttCAGTGCCGATGCAGCTGGAGTGcagggctctctctctccctctctctctctcactctccctccatctttcagtctctgcctctgtCAGTCTATATGAAGGGGGTAGAGGGACTCTGCTCTCCCGGCACGGCCACCAATCAGAAGCACCAGAACGTCACTGTGGCGGCCCACAGCGCCCAATCGGTGTCCTTCTCTGTGGTTCCCATGATGACGGGCAAGATCCCTATCGCTatggagggagaggagatCAGAGAAGAGATGACCAACATTATCAACCTGGGAAATGATGgggtgATGTCCAGGTCTCTGCTGATAGATGGGAAGATGCCGAACAACACTGTCCCAGAGTCAAAGACCAATGTGTTCTTCACAGTGACAGGTGATGTGTTTGAGCTGGACCGGGCACGGGTGCTGTTGACCCCAGCTGGCATCTCAGCGCTGATCCGCGCCCCCACAGGCTGTGGTGAGCAGACCATGATCAGCATGGCGCCCACCGCCATCGCTGTGGAGTACCTGGACCACACCCGCGAGTGGGCAGAGCTCCCACCCGGCAGCAGGGACTCCGCCATCGACAACATCGAAAAAgggtatTCCAGGATCCTGCAGTACAGGAAAGTGGATGGTTCCTATGGCGCCTGGCTACATTACCCCAGCAGCACCTGgctCACAGCGTTTGTGGTCAAGGTGCTGTCAGACCTGCAGAGGCTGAAGGTGGTCAGGCCAGATGAATTCCCTGCATCTGTCCAGTACCTCATCGCACAGCAGTCAGTCGACGGCTCCTTCGTTGACCCCAACCCCGTCATCCACAGGGAGATGCAGGGGGGCGTGGGGGGGCTGGAGGAGGACGTCTCTCTCACAGCCTTCGTCACCGTGGCGCTGCATCGCTCGCTGCCCTTGCTGACCAGAGAGCAGAGCGACAGAGCGGTGAGAGCTGACGACTCCATTAACCCCGAGAATAATTACAATAGTTACAATCTGACACTGCACAACAATTCACCACCTCACATTGAGGAGCACCGCTTGGTCCACGAGACTAAAGCCTACCTGGTGCCCCCCACCCAGGCCATCACCGTGGAAACCACTGCCTATGGGCTGCTGACTGCACTGCTCATTAGGGACACGGATTTCGCAGAGTCTGTCGCCTGTTGGCTGGCAAAGCAGGAGAACTATGGGGGAGGATTCAGATCAACACAGgACACGATAGTGGCTCTGCAAGCCTTGTCTCAATATGACATGAAGCGCAACCCCACCCTCCCTCCCAGCATGCAGCTGCAGTTCAGCGTGCCGGGCCGAGCGGAGAGAGAGACCGTGAGCCTGgacaagagaggagagagggtggAGCAGGAGCTCaagagGCTGGCTGGTCACCAGATCAAGGTTGACATCTCTGGGCGTGGCAAAGCCAAGATAAAGgtgGTGAAGGTCTATCACTCTCTGGACGTACAGAGCCCCTGCAAGCTCCTGTCTCTGGAGGTCATAGTGGAGGGGCGTGTCATTTACAGTGAGTCAGTGCTGCAGGACTACAGTTACTACGATGCGTATGGAGAGCTGGGTGGAGAGGGGCAGAGGGATGAGGGGAGCGAGGGAGGacggagggaggaggaggagagagccGCCCCCCTGTCAGAGATTGAATGGTTTGATGCTCGGGCCCGACGCCGCAGAGATACACAGAGCAGCGCTGATTCCCAGAAGGCCGTCACTTACACCGTCTGTATCAGtCATGACCTCAGTTTTAATCTCTCAGGGATGGCTATAGTTGACATCAGTCTGCTCAGTGGATTTGAAGCTGAGAGAGAAGATCTGGACaagttgAAGGATCTGGCGGATCAGTACATCAGTCACTATGAGATCACTGGTGGCAGAGTCATTATGTACTTTGAGGAGGTCATAGAGGAGAAGTACTGTGTTCAGTTTGAGCGGCGATGCACGGTGTTCTACAGCGCCCCCCGCAGGAGCGCCCTGGTCTCCACGCTGTGCTCCGGGGAGGTGTGCCAGTGCGCCGAGAACAGTGATGAGCAGCTGTCTGTTGGCTCAGAGCGTGTGTTTGCGAAGCGGCGTCAGTGTCGGGGGGGCCTGGAGCCGAAGAAGGAATATTTGATCATGGGCAACGATGGGGTCACAACTGACGAGCATGGCCAtgtGCAGTACCTGTTAGACTCCAGCACCTGGGTGGAAGAGCTGCCCGACCTGGAGGGCCGCTGTGTTGCAGCCCGCCGGTACCGGAGCTACTGCAAGGGCATCACCGACTTCCTGTCCGAGTACCAGAACGACGGCTGCACGATCTGA
>TU135722
CTGatttacacaatacatacacacacacacacacacacacacacacatacacactgacacggACTGACCCACACACATTGATACAGACTGACTACTAATCTGTTTGATCtgctctttttgtttctttagagACAACAAACACTgtcctagagagagagagggggaggggggcaaaaattaatttaaaactaacaTTACGACAGAGacagataaagagagagagagagagagagagagagagagagagagagagattaatacaGGCATTGGTCAACCAATTGATTGGACAGTACAGTTATATTGTACCGCACTGAGAGGgacgcacacagagagagagagacagagagtccATGGAGACAGACTCCAGCTAAGtggacactgcactgagagacgcacacagagacagaaactaatagacacacacacagacacacacacacacacacacgctgagtCGGGGGGTCATGGTGACTGCTctgtgtctgctgctgctgggctgTGCTGCCAGGACTGTGTGCGGAGAGGAGTTCCTGGTGCTGGCCCCCAATGTGTTCCATGTGGGTTTGCCAGAGAAGGTGTGGGTGCAGGTGGCCCCCGATGCCTCCCGGCGCCAGGTGTCGGTGTACCTGGAGGACGAGGTGACGCAGAGGAGGGTGACCGAGACGAAGGAGATATCGCTGGGGGGCGGCACTGCCATTCAGAGTGTCACTGTGGAGGACGTCTGACCTGCAGTTCGGCTCCGTGACGCCCTACCTGCTGCTGGTCACTGAGATCCAGCCCAGGGACAGGAAGGTGTGCAGGGTGCTGCTGTCTCAGGACCGCGGACACATCTTCATTCAGACGGACCAGCCCATCTACACCCCCACACAGACAGaacGCGGGGGGGAACCGGGTGAAGGTGGACACAGTGACGAGTAACAGGGACGGCCTGTACTACAGCAAAGTGCACATCCCCGACGTCTCACAgccagGCGTGTGGCGAATCACAGCCCAGTACAGCGGAGCTCAGAACAGGACAGCGAGCCGCGAGTTTGAGGTGAAGAAGTTTGtgttgccCAGCTTCGAAGTGTCCATCAAACCAGGTCGGCTCTTCTACAAGGTAGACGAGAAGGACTTCAGCTTCCGAGTCATGGCCCAgttCTCCTATGGTCAGCCAGTCCAGGGCTCGGCTCATGTTCGTTTCGCTGTGACTGATGAGTCTGGAGAGAACACCTTCATCAGGGGCCTTGAGATGGAGAGCAGCctGGTGAATGGGGAGGCCCAGTTCAATGTGTCCAGCGCGGAGGTCAGTGAGCTGCTGCAGCGGCCGCTGGCGGAGCTCAGCGGAGACTCTCTGTACATCGCCACCACCGTCATCGAGACCGCCaGTGGGGAGGTGCAGGAGGCTGATGTCAAGGTGCCTCTGGTCTCCACTCAGTTCTCAGTGGATCTCTCTCAGACGCGCCGGCACTATGTTCCCGGGGGCCCCCTCCGCATCTCTG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006256 True 4230 mRNA 0.59 34 986337 1003871
TU135722 False 1481 TUCP 0.56 9 985873 990822

Neighbor

gene id symbol gene type direction distance location
AMCG00006254 NA coding upstream 3188 974658 ~ 982685 (+)
AMCG00006253 NA coding upstream 25970 950922 ~ 959903 (+)
AMCG00006249 LOC106588375 coding upstream 39225 932159 ~ 946648 (+)
AMCG00006251 NA coding upstream 56787 924614 ~ 929086 (+)
AMCG00006250 vps52 coding upstream 77067 896978 ~ 908806 (+)
AMCG00006257 NA coding downstream 22332 1026203 ~ 1039280 (+)
AMCG00006261 NA coding downstream 73422 1077293 ~ 1085987 (+)
AMCG00006262 NA coding downstream 85720 1089591 ~ 1098771 (+)
AMCG00006264 NA coding downstream 98909 1102780 ~ 1107716 (+)
AMCG00006263 NA coding downstream 139906 1143777 ~ 1147913 (+)
G108496 NA non-coding upstream 52048 933515 ~ 933825 (+)
G108322 NA non-coding upstream 195040 789976 ~ 790833 (+)
G108308 NA non-coding upstream 203398 782025 ~ 782475 (+)
G108318 NA non-coding upstream 211834 773659 ~ 774039 (+)
G108314 LOC106569953 non-coding upstream 255687 727877 ~ 730186 (+)
G108513 NA non-coding downstream 63165 1067036 ~ 1067725 (+)
G108515 NA non-coding downstream 66456 1070327 ~ 1070771 (+)
G108516 NA non-coding downstream 67423 1071294 ~ 1071772 (+)
G108519 NA non-coding downstream 158993 1162864 ~ 1193441 (+)
G108540 NA non-coding downstream 197423 1201294 ~ 1201681 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other upstream 130153 846561 ~ 855720 (+)
G108319 NA other upstream 194811 774809 ~ 791062 (+)
AMCG00006236 NA other upstream 333733 644718 ~ 652140 (+)
AMCG00006231 NA other upstream 551968 426976 ~ 433905 (+)
AMCG00006218 NA other upstream 760520 219104 ~ 225353 (+)
AMCG00006276 NA other downstream 274589 1278460 ~ 1286052 (+)
AMCG00006275 NA other downstream 282958 1286829 ~ 1315558 (+)
G108585 NA other downstream 346512 1350383 ~ 1429987 (+)
G108626 rps5,LOC107086176 other downstream 633526 1637397 ~ 1814610 (+)
AMCG00006294 NA other downstream 732061 1735932 ~ 1741336 (+)

Expression


Co-expression Network