AMCG00006257


Basic Information

Item Value
gene id AMCG00006257
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1026203 ~ 1039280 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006257
atggctgcctctctgTCCCTGCTCTGTCTCGTACTCTCTGTCTCTTTGGTGACCGCCAACAAACTGGCCCCGCCCCCTGGAAGGAGCATAAATGCCACATCAACCAATGATGATCAAGCACCACCCAGCCGAGGCCCCGCCCCTAGGCCGGCCCTGACCAATCGCAACCCAGCTCTGAAACACAACCCCGCCCGGCACCCGGTCCTGGCCGGTCGCAGGCCGTCCCGTCAGAGCCCGCCTCTGCAGTCGGTCCGGCTGCAGGTGTCAGAGGCGGGCTCTGTGGGCCGGACCCTGGACCTGCACCCCGGCTCCCCCCTGGTTCTGACCCACCGCATCAACCTACTGCCACCAGCGACTGCGGGTTCCTGTGCGTGCGGGGCGGAGGACCTGTCTGCGCTCAGAGAGAGGCTGGAGCGGCTGGAGGCGCAGCTGTCAGAGCTGAGGGGGCGCTGTGGGGGAGACGGGCCCTGCTGCACCGCCCCGGCCACAGTGGACACCTATCACATCACACTGATCAGCAAGAAAGAGGGCGATCAGAAGGTGACGTCGAAGACAACCAGCTCCTCAGTGCTCATCCAATGGGATCGCTCAGTGTCGCAGATTGACAGGTACCGCCTCACCTTCTCGCCCAGTGATGGGGGAGAGGGGCTGACCGGGCAAAAGACCATCTCCCCTGAGCGAGAGACCACGCTGATCAATGGGTTGGAGGCGGGGCTCCGGTATGATGTCACCCTGACTGCGGAGCAAGGGCGGAGTCGCAGCCTTCCAGCAACCATCCAGGCCACGCCGGCCAAGGCAACCAAGGAGAAGACGGTGAAGTCAGTCAGGCCGGTCTTCTATATAGATGATACCCAGAAGGGCAGAGTGCAGGCTGGGTCTGAGGGGAACGCCACCCGAAACAAACtgatacagaaacagaaacagaaacagagccACAATGGAACCAGACCGGACTTGGGACCAGCGAAGAAGGACCTGCTGAAGCTGAGTAAGAAGAGCCAGACTCAGCACCAGCAGCCCGGCCCAGGAAAGAAGAACCTCTCCCCAGCACCTAGCTCAACCTCAGCACCAGGCTCCGAACGGGTGAAGACTGACAGAGGAAGAGGGGATGGGGATCTGAagaagaaagagggagaagaggaggaggagggggaggaaagGAAGCACCCCAAAAGAGTTTCTGTGGATGTGAAGAAACCCACAGAGAGGGAGCGAcagggggaggagagggagagagaggggagacagggggaggaggaggaagggaagagggggagggagagagagagggggagggactCAGACTCAGACTCCACCCCTGTCCCTGTCACCCAGCCGCCCCAAGCCGACAGGCAGGTGCCCTCGCAGCCTGTGGCGGGGGCAGCTGGGGGTGGCGTCAGTCCCGTGCATGAGCACTCTGCTCCTCGCCCCTCCACACCACCCCCTACCAGGACTTCCGCCCCAACCCCAGGTCCTAGGCAGGTGGCAGGGCCCACGGCAGAGCCACGGAAAACAGGGGGAGTGGAGAGGGATGGAAAAAAGGAGACAGGGACAGCAGGGAGGGGGGACCAGCGAGCCATTAAGATAGTCACCCCCAAGCTGCCCAAAGTTCCAAAGAAACCCAAGCTCCCCCACGTACCCACAGCTCCCAACAGAACCAGGGCCCTTCAAGACCCCCGACTGGCATCGACCTCCAAGAAGGGCCCAATTGTTTACCCCACCCGGAAGAACTTCACCTCTGGGCCGCCAGACTCCTCAACCCCTGACCGCACCCCCCCCAGGCCTGGCTCTGACCCAGCCACCAGGCAGCCCCATCAGGCCCACCCCGTCCCAGCACAGGAGTTGACCACGCCAGAAAAACCCTCTGACCAGTCCACACCAACTGCTAGGCTGGGACAGCAGTCCAGAACCAGGCTGGTCACACTGGAGTTGGATGTAGCAGGGACAGTGCAGCAATCAAAACCAGCAGCAGGGGGACCAGACACAGATGGAACAGCTGGACAGCCGCCAGTGAGACTACCAGAGGCAGAGTCTCAGGCTGGAACAACGATGGACGCGGTGGGGAAGGATGCGGCAGGGTCAGTTACTGATCCTGGGTCGCGCCCCACTGGGACACTGGACAAGCCCCACTCTAAAGCTGGAGCACGGAGGGCAGGACTGGTCGTTGGCAGGCCACGACAGAAGCACCCAGCCAGAGTCACAGTCCCGGCTAGAGCAGGGGACACCGCAAGGACAAACACCACAGACATGCACGCAAGGAAGACAACGCGAAGGCCCCAGACTGGAGACAAGACAGGCAGACTGGACACTGAGGGGACTGGATGGTCACCCACAGACAGAGGTAAAGCTCGTCCTAAAGAAGTGGGCAGGCAGACTGCTGGTGTGGACAGCGGCAGCTACTTGGACAGAAATACAGTGGAGTTGCTCCCAGTCAGGACAGACCCCCACGCTTTTGGGCAGGGGGGTGCGGGTGTgaaagaggaggggagggagggagtcagagtgtgggaggggggggcgACAGCTGGTTGGGCCAGAGCAACAACCACAACGACCATCACCCCCACGCCCATCCCCCAGCCTGGGCGCAAGCAGCCACCACCCCCCACAGCTGCATCCCGcgccccccactcccccatcTCACATGGCCCAGGCGCCTCTGACTCGGGTCCTGCCGGGTCGGAAGGGGCCGCACTGGATGACACTGAGGACCCTGTGCAAAGGGGAGCCCAGACCCCAGAGCAaaagagagagggtgggagagcaggagggcagagggagagaaaggagcCTGCGGGAGAGGTGTCGCTgccccagagagagagatggagggagggagaggcaggggATGGGAGAGAGACCAGGGgtgggggagagacagagagacacagagacggaGAGAAGGATGGCCCAGAAACGCCCCCACTAGCTCAATTGCCTCCCTACTGGCGGCACCCCACCCAGACAGGGCAGGGGCAGCAGGGAGGAAGGGACAGGGAACATCACACTCAGACGTTCCCCCTGAACCCCCCCAGGGCTGAGGGAAGGGACAGGACAGCTGCCAGAAATAGCACCCCAGCTGGAAATGGGGTGCTGGATAGAGAGGGCACCCTTCTCAGGAACAGGACACTGGTCAGGAATAGGGTGCTGGTCAAGAACGGAACACTGGTCAGGAATGGGGTGCTGGTCAAGAACGGGACACTGGTCAGGAATGGGATGCTCGTCAAGAACGGGACACTGGTTAGGAATGGGGTGCTGGTCAAGAACGGGACACTGGTCAGGAATGGGATGCTCGTCAAGAACGGGACACTGGTTAGGAATGGGATGCTGGTCAAGAACGGGACACTGGTCAGGAATGGGGTGCTGATAAAGAAAGGGATGCTGGTCAGGAAAGGGGCACTGGACAGAGAGAGCACCCCTCCCAGGAATGTTGAGCTGGTTTCCTTCTGGAACAGGACATCGCACGTCCTCTTATCCTCGCCTCCCAGTGTTGCCCCCACCCTCTTGGCCCCACCCCCCGGACCTGGTGCTCTGCAGGTGCAGAATCTGTCCTCCTCAGGTTTCCTGCTGCTGTGGGATGCCCCCCCTGGCCTGTACCACAGCTTCACCATCACTCGCACACAgctggacacagagagggagggtgagggggaggaggaagcagaagaaggaaaagaggaggaggaggaaggaaaaGGAAGCAAGAAGGACTCgcaggggagggaaaggggCACTCagggaggcaggagaggagacgGCAGCAGGGACAGGGGCAAACCAGCTGGTAGCTCCGAGGGCACTGCCCAGGGGGCAGAGAAAGCCCGTCCAGGCGGTGCCGGCAGCAGGCAAGGCAGGGTGGTCAAGCTGGTGTCCGGCTCCACCCGCTCCCTGTCCATCTGGGGTCTCCAGCCACAGACGCACTACGCCATCTCACTCTTTGGCACAGCACACGGCCGGGACTCCCCCACCCAGCGCCTCACTGTTACCACAGGGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006257 True 3996 mRNA 0.62 7 1026203 1039280

Neighbor

gene id symbol gene type direction distance location
AMCG00006254 NA coding upstream 43518 974658 ~ 982685 (+)
AMCG00006253 NA coding upstream 66300 950922 ~ 959903 (+)
AMCG00006249 LOC106588375 coding upstream 79555 932159 ~ 946648 (+)
AMCG00006251 NA coding upstream 97117 924614 ~ 929086 (+)
AMCG00006250 vps52 coding upstream 117397 896978 ~ 908806 (+)
AMCG00006261 NA coding downstream 38013 1077293 ~ 1085987 (+)
AMCG00006262 NA coding downstream 50311 1089591 ~ 1098771 (+)
AMCG00006264 NA coding downstream 63500 1102780 ~ 1107716 (+)
AMCG00006263 NA coding downstream 104497 1143777 ~ 1147913 (+)
AMCG00006270 NA coding downstream 160541 1199821 ~ 1213094 (+)
G108496 NA non-coding upstream 92378 933515 ~ 933825 (+)
G108322 NA non-coding upstream 235370 789976 ~ 790833 (+)
G108308 NA non-coding upstream 243728 782025 ~ 782475 (+)
G108318 NA non-coding upstream 252164 773659 ~ 774039 (+)
G108314 LOC106569953 non-coding upstream 296017 727877 ~ 730186 (+)
G108513 NA non-coding downstream 27756 1067036 ~ 1067725 (+)
G108515 NA non-coding downstream 31047 1070327 ~ 1070771 (+)
G108516 NA non-coding downstream 32014 1071294 ~ 1071772 (+)
G108519 NA non-coding downstream 123584 1162864 ~ 1193441 (+)
G108540 NA non-coding downstream 162014 1201294 ~ 1201681 (+)
AMCG00006256 NA other upstream 22332 985873 ~ 1003871 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other upstream 170483 846561 ~ 855720 (+)
G108319 NA other upstream 235141 774809 ~ 791062 (+)
AMCG00006236 NA other upstream 374063 644718 ~ 652140 (+)
AMCG00006231 NA other upstream 592298 426976 ~ 433905 (+)
AMCG00006276 NA other downstream 239180 1278460 ~ 1286052 (+)
AMCG00006275 NA other downstream 247549 1286829 ~ 1315558 (+)
G108585 NA other downstream 311103 1350383 ~ 1429987 (+)
G108626 rps5,LOC107086176 other downstream 598117 1637397 ~ 1814610 (+)
AMCG00006294 NA other downstream 696652 1735932 ~ 1741336 (+)

Expression


Co-expression Network