AMCG00006266


Basic Information

Item Value
gene id AMCG00006266
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1134901 ~ 1137952 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006266
GGGGAAGTCACACATAAACAACAGGAGTTCTAGCAATGTATGAGTAAGCAGTATAATGAAGTGCAAAATTATACAGACTTATTACAagatataataattatgaatattacaataatatgtatttattgttgtttgtaatgttttttgtccAGATCGTTTACTTCCTTGTTGATTAGCTCTCATGTGATCAACATGTTTTGgattgtgaaagaaaatgaaagaaagaaagaaaatgaaacaaaaaagtatcAACTTTACAAGCTTAGTCAAACACAGAACTCTGCTTAGAACAGTAGCTGTGAAATGGGGAAAATTTATCAAGTTATAGTTGTTGGAATAAGAGGAGATAAAAAAACAGTTGACGTTGGTCAGTCGGAAGAAGAGATGAATAGTCTGACTATCCTGGAATTCAAGAAAAAACTGATTGGAAAAATGTTACTGAATGCAGACCCAGATGAGTTAAGACTCATATTTGCTGACAGGCAAATGGAGGACTCTGACAAGTTTTCAGACCACCACATCAAGGACAAGTCTACCATCTTTGTTGTGCTGAAATTGCCTGGAGGATGTTAATGTTGCCAGGTGAGACAATCAACCACAGGAGAAGACATCTGAAGAAATCCTCTCCTTCTGCATTCATTAGGATTCAGGGATAGTTTTCTTCAGTATGAACTGGCTTGAGTCCCTGGGAGGCAACACCTcatcaacaaaaaacacaccaatGTGATGAAGACAGTGAtctaatttacaaaataatatgtttatatttttatttgaatggtgtatatataaaccTGAAGACATTGCCAGCATTAGCACTTTCTGAAACATTGTATATTGCCTTCCTCTGGAAATTCCTTAGTATTGTTTGAGTGTCACAGGgtaaagtgtgtgtgattgtatgtATATTCTCATTGAACCTCCTGTTGAAAGCTTGACTGATACAGGCCCTTGAGATCCACCATCCTTCAGATTGTATAGGCAATTTCAATCAGTGACTAGAACAAATGTATCAAATTTTAATGATTGTATTAGTTATCTGAATGGATGACTGGAATGAGAAGTGAAGACCCTTTGGCTTTCCAAGCGCAGGGTTTTGAATACCtgttcaagaaaagaaaactgaatgtttgctttttttccccttcaaaaATGGCCTAATTTGTAATAGAGAGATTAGAATAaagcctggattaaatcaaaagttatcTGCTATTTAAACTGAAgaattcatttatatttgtattagatGGTTATGgtatattgttttgctttgtatatgtataaaattgtgtgcttccaaaaaatattaattatgcatgtctgttttttttcttgcatccCACTCATATATTCTTTGAACATGCAGAAGATTCAGTCATacaaaagcagcaaaaaaatgtaatatgtatagGACACACAAATCAaggcatgtattttaaatgaattttaaaaagaccCTGCCAAAATGAAGACAAGTACAACTGGGGAGCATTGTAAAGAATAGTGTTATTCTACATAACATGggaaatacacatttgtgtTATAAATAATCCCTTTTATCTGTCAGGGAACAGTAAGAAGACTTACAATTGTTTCAGCTtggcatttttatatttgctgCACAAAAACAGTTTAGAGGAAGACAGATTATGTTTCTTTACCCAAAAACCAGCATTAACTCCAAATGCTTTACCTGCAGGACATTTTCATGTTCATgatatttgtaaaattattgAATGATGTGTCCACTTTGTAGGCTAActgcataattatttatttaccatcaGAAACCCTTACCCAGGGAAAGACACACAATATACAGATTTCAAGATGGCGCCCTTTCTACTATCAATAGGACCTAAAATGATTTTGGGGcgtttcttttaaatattagaaatgcAGCCTAGGAATGctcacattgcatttaaaaatatgaaattgtggCTTTGGGACACCAGTTTGGCTGTCTATTCCAGGTTTCACAATTTGCTCCCCAGCATAGCACTGTTGTACTGTAACAGGGGACCCTTTCTACTATCAATGGCACCTCATGGTTCTGGggactttattttaaacatcttcAAGCAAGTCTTTGAAAGCTAATGTAGTAAATGGAAAGAATAGGGGCACCAGTTTCAGAAATAGAtccccagcatgaaactattgtagcactattgtaccttaat
>TU136001
GGGCAGAGGGGAAGTCACACATAAACAACAGGAGTTCTAGCAATATCGTTTACTTCCTTGTTGATTAGCTCTCATGTGATCAACATGTTTTGgattgtgaaagaaaatgaaagaaagaaagaaaatgaaacaaaaaagtatcAACTTTACAAGCTTAGTCAAACACAGAACTCTGCTTAGAACAGTAGCTGTGAAATGGGGAAAATTTATCAAGTTATAGTTGTTGGAATAAGAGGAGATAAAAAAACAGTTGACGTTGGTCAGTCGGAAGAAGAGATGAATAGTCTGACTATCCTGGAATTCAAGAAAAAACTGATTGGAAAAATGTTACTGAATGCAGACCCAGATGAGTTAAGACTCATATTTGCTGACAGGCAAATGGAGGACTCTGACAAGTTTTCAGACCACCACATCAAGGACAAGTCTACCATCTTTGTTGTGCTGAAATTGCCTGGAGGATGTTAATGTTGCCAGGTGAGACAATCAACCACAGGAGAAGACATCTGAAGAAATCCTCTCCTTCTGCATTCATTAGGATTCAGGGATAGTTTTCTTCAGTATGAACTGGCTTGAGTCCCTGGGAGGCAACACCTcatcaacaaaaaacacaccaatGTGATGAAGACAGTGAtctaatttacaaaataatatgtttatatttttatttgaatggtgtatatataaaccTGAAGACATTGCCAGCATTAGCACTTTCTGAAACATTGTATATTGCCTTCCTCTGGAAATTCCTTAGTATTGTTTGAGTGTCACAGGgtaaagtgtgtgtgattgtatgtATATTCTCATTGAACCTCCTGTTGAAAGCTTGACTGATACAGGCCCTTGAGATCCACCATCCTTCAGATTGTATAGGCAATTTCAATCAGTGACTAGAACAAATGTATCAAATTTTAATGATTGTATTAGTTATCTGAATGGATGACTGGAATGAGAAGTGAAGACCCTTTGGCTTTCCAAGCGCAGGGTTTTGAATACCtgttcaagaaaagaaaactgaatgtttgctttttttccccttcaaaaATGGCCTAATTTGTAATAGAGAGATTAGAATAaagcctggattaaatcaaaagttatcTGCTATTTAAACTGAAgaattcatttatatttgtattagatGGTTATGgtatattgttttgctttgtatatgtataaaattgtgtgcttccaaaaaatattaattatgcatgtctgttttttttcttgcatccCACTCATATATTCTTTGAACATGCAGAAGATTCAGTCATacaaaagcagcaaaaaaatgtaatatgtatagGACACACAAATCAaggcatgtattttaaatgaattttaaaaagaccCTGCCAAAATGAAGACAAGTACAACTGGGGAGCATTGTAAAGAATAGTGTTATTCTACATAACATGggaaatacacatttgtgtTATAAATAATCCCTTTTATCTGTCAGGGAACAGTAAGAAGACTTACAATTGTTTCAGCTtggcatttttatatttgctgCACAAAAACAGTTTAGAGGAAGACAGATTATGTTTCTTTACCCAAAAACCAGCATTAACTCCAAATGCTTTACCTGCAGGACATTTTCATGTTCATgatatttgtaaaattattgAATGATGTGTCCACTTTGTAGGCTAActgcataattatttatttaccatcaGAAACCCTTACCCAGGGAAAGACACACAATATACAGATTTCAAGATGGCGCCCTTTCTACTATCAATAGGACCTAAAATGATTTTGGGGcgtttcttttaaatattagaaatgcAGCCTAGGAATGctcacattgcatttaaaaatatgaaattgtggCTTTGGGACACCAGTTTGGCTGTCTATTCCAGGTTTCACAATTTGCTCCCCAGCATAGCACTGTTGTACTGTAACAGGGGACCCTTTCTACTATCAATGGCACCTCATGGTTCTGGggactttattttaaacatcttcAAGCAAGTCTTTGAAAGCTAATGTAGTAAATGGAAAGAATAGGGGCACCAGTTTCAGAAATAGAtccccagcatgaaactattgtagcactattgtaccttaatgctattacttttacaaattctgttcagtttaac

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006266 True 2189 mRNA 0.35 2 1134934 1137945
TU136001 False 2114 lncRNA 0.35 3 1134901 1137952

Neighbor

gene id symbol gene type direction distance location
AMCG00006258 psb7,LOC106569939,LOC106588382 coding downstream 61607 1068054 ~ 1073294 (-)
AMCG00006260 NA coding downstream 85173 1048178 ~ 1049728 (-)
AMCG00006259 NA coding downstream 87391 1042862 ~ 1047510 (-)
AMCG00006255 NA coding downstream 234056 896978 ~ 900845 (-)
AMCG00006248 rxrba,rxrb,LOC107729870,LOC107566635,LOC107751683 coding downstream 349316 774474 ~ 785585 (-)
AMCG00006265 NA coding upstream 18775 1156727 ~ 1160200 (-)
AMCG00006268 rnf5,LOC107694772 coding upstream 25348 1163300 ~ 1170846 (-)
AMCG00006267 NA coding upstream 33729 1171681 ~ 1179064 (-)
AMCG00006271 NA coding upstream 43758 1181710 ~ 1191081 (-)
AMCG00006272 NA coding upstream 55318 1193270 ~ 1199994 (-)
G108705 NA non-coding downstream 15203 1109651 ~ 1119698 (-)
G108689 NA non-coding downstream 33609 1040218 ~ 1101292 (-)
G108664 NA non-coding downstream 176223 953292 ~ 958678 (-)
G108655 NA non-coding downstream 201076 933515 ~ 933825 (-)
G108491 NA non-coding downstream 225873 907890 ~ 909028 (-)
G108717 NA non-coding upstream 42630 1180582 ~ 1201681 (-)
G108682 NA non-coding upstream 154086 1292038 ~ 1306880 (-)
G108750 NA non-coding upstream 182746 1320698 ~ 1321213 (-)
G108752 NA non-coding upstream 190850 1328802 ~ 1332044 (-)
G108756 NA non-coding upstream 212133 1350085 ~ 1397331 (-)
G108708 NA other downstream 211 1126562 ~ 1134690 (-)
AMCG00006247 NA other downstream 260407 838855 ~ 874494 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 386165 726064 ~ 748736 (-)
AMCG00006243 NA other downstream 432961 700535 ~ 701940 (-)
AMCG00006241 NA other downstream 572486 479582 ~ 562415 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other upstream 73334 1211286 ~ 1216184 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 199235 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 206564 1344516 ~ 1637731 (-)
G108755 NA other upstream 212533 1350485 ~ 1554664 (-)
AMCG00006279 NA other upstream 220445 1358397 ~ 1510540 (-)

Expression


Co-expression Network