AMCG00006271


Basic Information

Item Value
gene id AMCG00006271
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1181710 ~ 1191081 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006271
ACAGAGGGAGAGATTTATTCGCTGAAGTTGGCAGGGCTGGTTTAGCGACTCCTGTCCTGTTCACACAGTCGCGCTGCTTTTTCATGGGATTTCACCTTGATTGTCCATGAGTGCCCGAAGAAGCCAGTCTTGAACTGAAGAAGTGGGATCTGACGAGGCAGCGGACATGGGGAAAAAGAAGGACGAGGCCAGTGCGCCGCAGTATGCAAAATTTGACCCCAGCTTCAACGGCCCCATCAAGAACAGgagctGTACAGATatcctgtgctgtgtgctgttcaTGGCTGCTATCGCAGGCTACATGGTTGTAGGAATTATGGcctggCTGTATGGAGATCCTCGTCAAGTCCTCTACCCCAGGAACTCCACTGGCATGTTCTGCGGACTGGGAGAGAACAAAGACAAGCCCAATGTCTTTTACTTTAACATTCTCAAGTGCGCCACGGCCACTAATATAATGGCAGCAGCTCTGAATGGACTGCAGTGTCCTACCACGCAGgtgtgtgTGAAGTCCTGTCCCAATGACTTCTGGATTGCTCCAGTATTGCCCAACACCATTCTCAtattGGGACGCTGTCTGCCCAGCACTAGCTTCCTGGACAAGATCCCCTCAAACTTCACATTGCCAGGGATGGTCAACGCCAACCAGACGGCCTCTAGCATCAAGAACGCCACCCGtgaTGTCGTCTCAGGGTTAGCGGGTGCAAAGGACATCGGTGTTCGGATCTTTGAGGATTTTGCCGTTTCCTGGTACTGGATCCTCATTACTGACCGTACTAACCCCGTCTCTCCCCAGTGGGCTGCTGATCGCTATGCTGtgattATCCTGGCTGTGCTGGAGGGGAtcctgctgctggtgctgctctTCCTCAGGACCAGGATCCTCATCGCCATCGCACTCATCAAGGAGGCCAGCAAggcGGTCGGTCACATGATGTCCACTCTGGTGTACCCTGTGATCACCTTCATCCTGCTGGGCCTCTTCCAGCGCAACCTGTTCAACCTGCAGATCTACAACGTGCTGGCCTTCCTGTGGGTGGTCAACTTCGTCATCGCGCTGGGCCAGTGCACGCTGGCCGGGGCCTTCGCCTCCTACTACTGGGCCTTCAGCAAACCAGGGGACATCCCTGCCCTGCCGCTGACTGCCAGCTTCTTCAGGACGCTGCGgTACCATGTGGGCTCCCTGGCGTTTGGCGCTCTGATTCTGACCATCATCCAGTTCATCAGGATCatcGCAGTCTATGGCAAGAACTTCTGCGTCTCGGCGAAGAACGCCTTCATGCTGCTCCTGAGAAACATCGTGAGGGTGGTGGTGCTGGATAAAGTGACTGACCTACTGCTGTTCTTCGGAACATTGCTGGTGGTGGGCGGAGTCGgagtgttgtccttcttcttcttctccggCAGGATCCAGCTGCCCAATGACACGTTCCGCGCAGAGACTCTCAACTACTATTGGGTGCCCATCATCacAGTGGTGGTCGGCTCCTATCTCATCGCTCAAGGCTTCTTCAGTGTGTACAGCATGTGCGTCGACACCCTCTTCCTCTGCTTCTtggaGGACCTGGAGAGGAATGATGGCTCGGAGCAGAAGCCCTACTACATGTCCAAGAGCCTGATGTCCATCCTgaacaagaagaacaagaagcccaagaaggagaagaaaggcAAGAAGGAGGAGAACTGAGAAGCTTCTGTccagagagatggagggggggagagaggaaaagagagaggagTGAGGGAGGGACAGCAGATGAGATTATAGTGCGTTCTtaagtttcacttttttttttttaaatgacaatttcgctgtttttaataataataataataagaagaatgaTTATAATGTTTTCAATGTGCCTTAACTGAGCGATGAAGCACTTTAACAATGCCCTCTAGTGGCTATGAGGAGACACAGATATAGATGTGGTAACAGTGACGGTCATATTGaaggaaatatatgtataaccATAGATTGACAGACTGACACAAGGACCTGTCTGCACTTGCATATTTACACAGACGGGAAGatgcacactgacagactggCAGACATGGGCATATAGATGTAAATATCATGATTGTTTATTGTGAGGCACAACGCAGAATTTACTTGGGAAATGAAACAGATTTATATTGATGTATCTCAggcgtacacacacacacacacaaacgtacACGGATGTTGATTTCCTCGCACACTGGCTGACACGGGTCCCAGTCCAGTTGCACACATGTTCGCTGGATGCTTTAAATCCAATCAACCATGAAGTGCCTTTTAATTCGAATGATTAGACAATGATGTTGTTAGAAGAGAGTTTCACTGTTTACTGTTGGTGGCAGAGGTGCGTGGACAGGCCGGGGGCAGAGAGAGGACTCTGCCGTCCCCCAGTCTTTACACAGACAGATTGTccatgttgttttctgtttttttttctatacacATGTTTAATAAATTTGAAACAGCTGCTTGAATCAAAACCAAACTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006271 True 2496 mRNA 0.50 18 1181710 1191081

Neighbor

gene id symbol gene type direction distance location
AMCG00006267 NA coding downstream 2646 1171681 ~ 1179064 (-)
AMCG00006268 rnf5,LOC107694772 coding downstream 10864 1163300 ~ 1170846 (-)
AMCG00006265 NA coding downstream 21510 1156727 ~ 1160200 (-)
AMCG00006258 psb7,LOC106569939,LOC106588382 coding downstream 108416 1068054 ~ 1073294 (-)
AMCG00006260 NA coding downstream 131982 1048178 ~ 1049728 (-)
AMCG00006272 NA coding upstream 2189 1193270 ~ 1199994 (-)
AMCG00006273 NA coding upstream 57061 1248142 ~ 1261579 (-)
AMCG00006280 NA coding upstream 102315 1293396 ~ 1297970 (-)
AMCG00006278 nelfe coding upstream 107756 1298837 ~ 1300643 (-)
AMCG00006285 NA coding upstream 303279 1494360 ~ 1498054 (-)
G108705 NA non-coding downstream 62012 1109651 ~ 1119698 (-)
G108689 NA non-coding downstream 80418 1040218 ~ 1101292 (-)
G108664 NA non-coding downstream 223032 953292 ~ 958678 (-)
G108655 NA non-coding downstream 247885 933515 ~ 933825 (-)
G108491 NA non-coding downstream 272682 907890 ~ 909028 (-)
G108682 NA non-coding upstream 100957 1292038 ~ 1306880 (-)
G108750 NA non-coding upstream 129617 1320698 ~ 1321213 (-)
G108752 NA non-coding upstream 137721 1328802 ~ 1332044 (-)
G108756 NA non-coding upstream 159004 1350085 ~ 1397331 (-)
G108760 NA non-coding upstream 214312 1405393 ~ 1409747 (-)
AMCG00006266 NA other downstream 43758 1134901 ~ 1137952 (-)
G108708 NA other downstream 47020 1126562 ~ 1134690 (-)
AMCG00006247 NA other downstream 307216 838855 ~ 874494 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 432974 726064 ~ 748736 (-)
AMCG00006243 NA other downstream 479770 700535 ~ 701940 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other upstream 20205 1211286 ~ 1216184 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 146106 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 153435 1344516 ~ 1637731 (-)
G108755 NA other upstream 159404 1350485 ~ 1554664 (-)
AMCG00006279 NA other upstream 167316 1358397 ~ 1510540 (-)

Expression


Co-expression Network