AMCG00006272


Basic Information

Item Value
gene id AMCG00006272
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1193270 ~ 1199994 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006272
cagtgcgaGGAtgcgggggggtggggaggtgaGGCGTGGCCCCCTCCAGCCCCTGGTTGCTACAGGAGATGCTGTGGACAGCGTTGGGCCCTCAGTGGTCCTGCCCAACGGCCAGCTGGTCTGTCCCAGCGCTCTGCCCCCGGGGCCCAGCAGGGCAGCGATACAGAGAGCCATCCTGACACAGGACACTGAGAGGAGGAAGAAGCTCCGGTTCCATCCGCGCCAGCTGTACCCGGCTGCCAAGCAGGGCGAGACGCAGAGGGTTCTGCTCATGCTCAtggAGGGGATAGACCCCGGCAGTCAGTCTGACAGTCAGAACCGGCGCTCTCCGCTGCACGCGGCCGCCCAGCGAGGCCTGCTGGACATCTGCTACCTGCTGGTCCAGgCAGGCGCTAAGGTGGACGCCCAGGATAAGTCCCTGAAGACCCCACTGCTGGAGGCCATTGTGAGCGGACACCTGGAGGTGGTGAAGTACCTGGTCCAGAGCGGAGCCTGCGTCTTCCACACTGAGGAGGACGGCTCCACGGGGCTCCACCATGCGGCCAAGCTGGGCAGCCTGGACATCGTGTCCCTGCTGCTGGGGACGGGGCAGGTGGACATCAACGCACAGGACAGCGGCGGCTGGACTCCGGTGATCTGGGCGGCGGAGCACCGGCACATCGAGGTCATCAAAGCCCTGCTGGCCAGAGGGGCGGACGTGTCTCTGAAGGACAAGGAGATGAACGTGTGTCTGCACTGGGCCTCGTTCGCCGGCAGCGCTGACATCGCTGAGCTGCTGCTGTCGGCCGGCTGCGACCTCCACGCCCTCAATCTGCACGGAGACACGCCACTGCACATCGCTGCCCGCGAGGGCTACCTGGACTGCATCACgCTGTTCCTGTCTCGGGGGGGTGACGTGGAAGTGTGTAACCGCGAGGGCGACTCCCCGCTGTCCCTGGCGCGGCCACACTCCCCCTCCTGGGTCGCCCTGCAGATCAACAGGAGGCTGCGCGGCGGTcactgTGGCTGTACGGACGACTGCTCCTCCAGTAACTGTCTCTGTGGGCAGCTGAGCATCCGCTGCTGGTATGACAAGGACGGCGAGGTGTACTGTATCGATGCCCGTTACTACGGCAACATCAGCCGGTTCATCAACCACCTGTGCGACCCCAACATCATCCCATGCGGCTCTGAGAAGTGTAAGCACTCGGCCGAGGCCATCGCCCTGGAGCAGAGCCGGCTGGCCCGCTTGGAGGCCTGCCCAGACACTGGGGCCGAGGCGGGGCCAGGCCTGATAGGAAGCATCTAG

Function

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0051570 regulation of histone H3-K9 methylation biological_process
GO:0022008 neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006272 True 1288 mRNA 0.66 11 1193270 1199994

Neighbor

gene id symbol gene type direction distance location
AMCG00006271 NA coding downstream 2189 1181710 ~ 1191081 (-)
AMCG00006267 NA coding downstream 14206 1171681 ~ 1179064 (-)
AMCG00006268 rnf5,LOC107694772 coding downstream 22424 1163300 ~ 1170846 (-)
AMCG00006265 NA coding downstream 33070 1156727 ~ 1160200 (-)
AMCG00006258 psb7,LOC106569939,LOC106588382 coding downstream 119976 1068054 ~ 1073294 (-)
AMCG00006273 NA coding upstream 48148 1248142 ~ 1261579 (-)
AMCG00006280 NA coding upstream 93402 1293396 ~ 1297970 (-)
AMCG00006278 nelfe coding upstream 98843 1298837 ~ 1300643 (-)
AMCG00006285 NA coding upstream 294366 1494360 ~ 1498054 (-)
AMCG00006283 NA coding upstream 350449 1550443 ~ 1555554 (-)
G108705 NA non-coding downstream 73572 1109651 ~ 1119698 (-)
G108689 NA non-coding downstream 91978 1040218 ~ 1101292 (-)
G108664 NA non-coding downstream 234592 953292 ~ 958678 (-)
G108655 NA non-coding downstream 259445 933515 ~ 933825 (-)
G108491 NA non-coding downstream 284242 907890 ~ 909028 (-)
G108682 NA non-coding upstream 92044 1292038 ~ 1306880 (-)
G108750 NA non-coding upstream 120704 1320698 ~ 1321213 (-)
G108752 NA non-coding upstream 128808 1328802 ~ 1332044 (-)
G108756 NA non-coding upstream 150091 1350085 ~ 1397331 (-)
G108760 NA non-coding upstream 205399 1405393 ~ 1409747 (-)
AMCG00006266 NA other downstream 55318 1134901 ~ 1137952 (-)
G108708 NA other downstream 58580 1126562 ~ 1134690 (-)
AMCG00006247 NA other downstream 318776 838855 ~ 874494 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 444534 726064 ~ 748736 (-)
AMCG00006243 NA other downstream 491330 700535 ~ 701940 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other upstream 11292 1211286 ~ 1216184 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 137193 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 144522 1344516 ~ 1637731 (-)
G108755 NA other upstream 150491 1350485 ~ 1554664 (-)
AMCG00006279 NA other upstream 158403 1358397 ~ 1510540 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014400 ehmt2 coding NC_007130.7 CM002903.2 981321 ~ 1002959 (-)
grasscarp (Ctenopharyngodon idella) CI01000319_00928464_00947291 NA coding CI01000319 null 928464 ~ 947437 (+)