AMCG00006273


Basic Information

Item Value
gene id AMCG00006273
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1248142 ~ 1261579 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006273
CCTCTGTAGCTGAAAATGGGAGAAGATGGAGTCACTTCaagaagaaagttattttatttagttcCCAAAACTGTCTTTGAGCACTACATCTGGGTTCTGGTAAAGGCAGCAGAAGACATCCCATATGTTCCCAGTTTCGTATGTGGTagaaacattacagaataatcTTGTTACCAGATGACGGATCAAAGGTTTCTTTTTCTGATCACTTGcaccattttaatttgctttttttttaaagttttttcaCTGTAGCACTATGTATTGATCCATACAGAGAGCACAGTTTAAGGTAAAAGAAGGCCAGCACCATGACATGCTTCAGATGCACTGCACTGGTGTTGATTACACGGCAAAAGTCCTCATGAGTTTGAAACTGTGGGAAGCAACACTCTGCCACAGTGTCGGGACAGTGAACCACTCCCCACGACAACAGAAACCGAAAGAGAAGGCGATTTGTGTCATTTCCCGTGAAGACCCTCTGCTCCATGGCCTCCTCCGCCCTGCTCAGAGAGCTGCAGTGCCCGCTGTGTCTGAGTCTGTTCACGGACCCGGTCAGCCTGGCCTGCGACCACAGCTTCTGTCGCCGCTGCATCCAGACCCTCCTGGCCTCCGACACGACAGCGCCCCTGTGCCCGCAGTGCAGAGCCCCCATCACCCGGAGGGCCTTCACCGTCAACCGGGTCCTGAGGAACATGGCCGACGCGGCGAGAGAGGAGCAGCAGAGACGCCGCAGACACGGAGAGCTGCGCTGCCCGGAGCACGACGAGAGGCTGAAGCTGCTGTGCGAGACGGACCGGCAGCTGGTGTGTCTGGTCTGCCGGGACAGCGAGGCCCACAGCGGGCACGTCTTCAGACCGGTGCAGGAGGCGGCGCGGAGCTGCCAGGCACAGCTGCGAGGCGCTCTGCAGTTTCTCTCTGAGGACAGTGCAGCTGTGGAAGGCCTGGCCAGCGAGCAAACAGCACAGATCGACAGCACcagaATCGGGGCTCAGTTTGCGGAGCTGCATGAATTCCTGCGGcgcagagaggaggaggtgaaGAGGGATCTGCAGCAAGCAGAGCAGGAAGATCTGCAGGCCATGCAGAAGAACCTGCCACAGATCGAGACAGCGCTGAGAGAAAGCAGAGCGAAAGAGAGGGCTCTGCAGTGCGGACTGGACATCCCTGAGCCGGACAACTTTCTACTGTGGTGGTGTGACAAGGGGGCCACTACAGTGGACGGGCTGAAGAAGGAAATGCCACGATCAGCCAGGGATACTGAGGGAGTGGTGGAGGCAGTGTATAAGTCCAGGCTGCAGTCTCTGCGTGTCACCCCAGGCTCTCTGACCCTCGAGCCTTACGAGACTCACTTGCAGTTTTTCATCTGGAAGGAGATGCTGAAAGTCATCAAACCAGTTCCTGAGCGCTTGACAGTACCTTCCAGTTATGGTCTGAAAGTGTCCAGCGATGGATCAAGTGAAGTATTAAAGATCACCATGTCTGGCCTTCAGGTGCATCCCTCCACCTCCCCATTGTGCCCCTCTGTTGCTCTTTCTGCCTTGTGTTGCTCTGTGGATCTGTCTCAGGACCTGAACAGCCCTCTGCCAGTTCTTTAA

Function

GO: NA

KEGG:

id description
ko04668 TNF signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006273 True 1598 mRNA 0.55 8 1248142 1261579

Neighbor

gene id symbol gene type direction distance location
AMCG00006272 NA coding downstream 48148 1193270 ~ 1199994 (-)
AMCG00006271 NA coding downstream 57061 1181710 ~ 1191081 (-)
AMCG00006267 NA coding downstream 69078 1171681 ~ 1179064 (-)
AMCG00006268 rnf5,LOC107694772 coding downstream 77296 1163300 ~ 1170846 (-)
AMCG00006265 NA coding downstream 87942 1156727 ~ 1160200 (-)
AMCG00006280 NA coding upstream 31817 1293396 ~ 1297970 (-)
AMCG00006278 nelfe coding upstream 37258 1298837 ~ 1300643 (-)
AMCG00006285 NA coding upstream 232781 1494360 ~ 1498054 (-)
AMCG00006283 NA coding upstream 288864 1550443 ~ 1555554 (-)
AMCG00006291 NA coding upstream 334093 1595672 ~ 1599457 (-)
G108717 NA non-coding downstream 46461 1180582 ~ 1201681 (-)
G108705 NA non-coding downstream 128444 1109651 ~ 1119698 (-)
G108689 NA non-coding downstream 146850 1040218 ~ 1101292 (-)
G108664 NA non-coding downstream 289464 953292 ~ 958678 (-)
G108655 NA non-coding downstream 314317 933515 ~ 933825 (-)
G108682 NA non-coding upstream 30459 1292038 ~ 1306880 (-)
G108750 NA non-coding upstream 59119 1320698 ~ 1321213 (-)
G108752 NA non-coding upstream 67223 1328802 ~ 1332044 (-)
G108756 NA non-coding upstream 88506 1350085 ~ 1397331 (-)
G108760 NA non-coding upstream 143814 1405393 ~ 1409747 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other downstream 31958 1211286 ~ 1216184 (-)
AMCG00006266 NA other downstream 110190 1134901 ~ 1137952 (-)
G108708 NA other downstream 113452 1126562 ~ 1134690 (-)
AMCG00006247 NA other downstream 373648 838855 ~ 874494 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 499406 726064 ~ 748736 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 75608 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 82937 1344516 ~ 1637731 (-)
G108755 NA other upstream 88906 1350485 ~ 1554664 (-)
AMCG00006279 NA other upstream 96818 1358397 ~ 1510540 (-)
AMCG00006284 prrc2a other upstream 211899 1473478 ~ 1493970 (-)

Expression


Co-expression Network