AMCG00006274 (zbtb12,LOC106570057,LOC106588515)


Basic Information

Item Value
gene id AMCG00006274
gene name zbtb12,LOC106570057,LOC106588515
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1211286 ~ 1216184 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006274
ATGGAGGTGCTGCGGTTCCGGCTGCCGGGTCACGGAGACGCCACGCTGCGGAACATGAACACGCTAAGGACACGCCAGCGCTTCTGTGACATAACGATCGTTGCCAATGACAACCAGAAGTTCCGGGGGCACAAGGTTGTGCTGGCCGCCTGCTCTCCCTTCCTCAGGGACCAGTTCCTGCTCAACCCCTCCTCTGAACTGCAGGTGTCACTGCTGCACAGCTCCAGTATTGTCTGTGAGCTGCTGCTGTCCTGCTACACTGGGCTGCTGCAGTTCTCCGTGGGGCAGGTGGCTCCCAGCCGCACACAGAGGCCCTCCTCCCTCTCACAGGCGGACAGACCGACTGACGCCATACACAGCCTGCCCGTGGTCAAGGCGCCAGGCACCTTGCGTGTGACGTCACCTCAGCGGCAGGACGTGACCACGCCCACTGTCGTTTGTCCCCTTTTCCCGGGCGAGCGCCTTGACCACGCCCCCCACAGCACCTCCTTTTCCTCGCCCTTTCTCCACAGTCACATGACCAGGAAAGCCAATGCTGGAGGCCATTTTGGAGTGCCCGAGCTGCTGTTGGCGCTGGGGTTGCTGTTCGGGTTGGTCCAACCAGACAGACGGACGACATCAAGGTGA
>TU136026
CGCGGAAGTGTGGTGCTTTGTGCGGGCACTGCAATGCGCTGTTCCACGCGTACCGGGTTTAACACGAGCAATCACCGGACAGTGCTGGCCGAATGCATTATTCATAATCAATAAAGCTCGCCGACTGTACGTGGGGCGAGAAATAAAATGTCTCCTGTGCCTTTAAACGGGATCTCGCTGCGTCCCGTGCAAAGTCTCGTCGCAAACGAGAACACGAGCAAACAAGAGACAGACGGGGCGAGAAAGGGACGGTGAGAGGAAAGTGATGGGGGCTTATTGCTGAGCAGGCAACCGCAATCAGCTCTGTCCAATGGCGACGGCGTGACGCTGAAGCAGCAACACCTTGTGCACCGAGTGCCCGAGCTGCTGTTGGCGCTGGGGTTGCTGTTCGGGTTGGTCCAACCAGACAGACGGACGACATCAAG
>TU136027
AGTATATTGAGTGACTGTCTCAGTGCGTGATGGAGGTGCTGCGGTTCCGGCTGCCGGGTCACGGAGACGCCACGCTGCGGAACATGAACACGCTAAGGACACGCCAGCGCTTCTGTGACATAACGATCGTTGCCAATGACAACCAGAAGTTCCGGGGGCACAAGGTTGTGCTGGCCGCCTGCTCTCCCTTCCTCAGGGACCAGTTCCTGCTCAACCCCTCCTCTGAACTGCAGGTGTCACTGCTGCACAGCTCCAGTATTGTCTGTGAGCTGCTGCTGTCCTGCTACACTGGGCTGCTGCAGTTCTCCGTGGGGCAGGTGGTGGATTACCTGACCGCCGCCAGCTACCTGCAGATGGAGTTCGTGGTGGAGAAGTGCAGAGGAGCCCTGAGCCAAGTCATCCAGCCTCGCATCACTTCCCTCCaccccttctctctgtctcccagcAGTGCCGGTCAGCGGGGGTCCTGTCGTGCTGCCGTCTCCAGGGCTCCCCCCGGTGGAGTCTGCGTTTCGGTGCAGGCTCCCAGCCGCACACAGAGGCCCTCCTCCCTCTCACAGGCGGACAGACCGACTGACGCCATACACAGCCTGCCCGTGGTCAAGGT

Function

symbol description
zbtb12 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleoplasm.

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006274 True 627 mRNA 0.62 5 1211286 1216155
TU136026 False 425 lncRNA 0.56 2 1211290 1213391
TU136027 False 607 TUCP 0.62 3 1215225 1216184

Neighbor

gene id symbol gene type direction distance location
AMCG00006272 NA coding downstream 11292 1193270 ~ 1199994 (-)
AMCG00006271 NA coding downstream 20205 1181710 ~ 1191081 (-)
AMCG00006267 NA coding downstream 32222 1171681 ~ 1179064 (-)
AMCG00006268 rnf5,LOC107694772 coding downstream 40440 1163300 ~ 1170846 (-)
AMCG00006265 NA coding downstream 51086 1156727 ~ 1160200 (-)
AMCG00006273 NA coding upstream 31958 1248142 ~ 1261579 (-)
AMCG00006280 NA coding upstream 77212 1293396 ~ 1297970 (-)
AMCG00006278 nelfe coding upstream 82653 1298837 ~ 1300643 (-)
AMCG00006285 NA coding upstream 278176 1494360 ~ 1498054 (-)
AMCG00006283 NA coding upstream 334259 1550443 ~ 1555554 (-)
G108717 NA non-coding downstream 9605 1180582 ~ 1201681 (-)
G108705 NA non-coding downstream 91588 1109651 ~ 1119698 (-)
G108689 NA non-coding downstream 109994 1040218 ~ 1101292 (-)
G108664 NA non-coding downstream 252608 953292 ~ 958678 (-)
G108655 NA non-coding downstream 277461 933515 ~ 933825 (-)
G108682 NA non-coding upstream 75854 1292038 ~ 1306880 (-)
G108750 NA non-coding upstream 104514 1320698 ~ 1321213 (-)
G108752 NA non-coding upstream 112618 1328802 ~ 1332044 (-)
G108756 NA non-coding upstream 133901 1350085 ~ 1397331 (-)
G108760 NA non-coding upstream 189209 1405393 ~ 1409747 (-)
AMCG00006266 NA other downstream 73334 1134901 ~ 1137952 (-)
G108708 NA other downstream 76596 1126562 ~ 1134690 (-)
AMCG00006247 NA other downstream 336792 838855 ~ 874494 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 462550 726064 ~ 748736 (-)
AMCG00006243 NA other downstream 509346 700535 ~ 701940 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 121003 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 128332 1344516 ~ 1637731 (-)
G108755 NA other upstream 134301 1350485 ~ 1554664 (-)
AMCG00006279 NA other upstream 142213 1358397 ~ 1510540 (-)
AMCG00006284 prrc2a other upstream 257294 1473478 ~ 1493970 (-)

Expression


Co-expression Network