AMCG00006275


Basic Information

Item Value
gene id AMCG00006275
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1286829 ~ 1315558 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006275
GCCAGAGTGATAACAGAACTATCTTCTGcgctctctttctttctctctctctctctctctcagtttaagcagctctcctctctgctcAGTCGTTGATGACATTTGCCATGCTGTGGACTCTGGGTATTTTCAGTGCCATCTCTTCTCTCCTCGCTGCTGACCTCCAGTGCAGTCCTGATAGCCTCTCTATCTCGGGGGGCTCCTTCAACCTCTCTGATGGCTACAATGTGATGAGTGTGCTGACATACCACTGCTCCCCCGGCCTctacccccaccccaccctgaCTCGCCGCTGTGGGAGAAACGCGCAGTGGAGCCCAAGGCCCAGCAAGTACTTTACAGCGCAGTGCAAAGtGGTCACGTGCCCAGACCCCAGTGTGCTCCAGCAGGGCTCCGTGACTCCCTCTCAGCCCCAGTACTTCATTCACAATGAGACTCGCTACCAATGTTATGAGAGCTACAAGCTGCGGGGCTCCGCCTCCCGCACCTGTCAATCAAACGGCAAGTGGAGCGGAGACACGCCCATCTGCGACAGCCTTGTCTCAGCAGATGACTGCCCCGACCCTGGTGTGCCTCCGGGTACGAGACGGACAGGGAATCGCTTTGGGATCGACGACAAGGTGTCCTACCGCTGTGACCGGGGGCTCATCCTGGTGGGGTCCTCGGAGAGAGTGTGTCTGGAGAACAGAGAATGGTCTGGGGCCGAGCCGGCCTGCTACTACAAGCACACCTATGACAGCCCCGAGGACGTGGCCCAGGCGTTCTCCTCCTCCCTGGGGAACCTGCTGGAGGTGTCGGGCTCTGAGGCCCCTGAGGCAGATGGCAAGCGGTTTGGACGGAAGATCAAACTTCAGAGGGGAGGGAAGCTGAACATATATGTAGCCCTGGATTGCTCCAGTAGCGTCGGGATAGAAGACTTCAAGAAGTCCAAGAACTGCATTGAGAAACTCATAGAGAAGattGGTAATTTTGAAGTGTCCCCCCGGTACGACGTCCTGACCTTCGCCACCACCATCAAGGAGATTGTCAACATCAATGACGAGGACGATGACCCGGCCATTGTGATGGACAAGATCGCCAACTTCAATTATGAAGATCATGGAGACCAGACCGGCACTAACATCGCTGGTGCCTTCCACAACATCCATGGGAAGATGAATTTCCTGAGTGCGTCCAAACCCGAGAAATTCAGGGAAACCCGGCACGTCATCATTCTCTTCACTGATGGCAGGGCCAACATGGGGGGCAGTGCAGAGTTGGAGGTCAAGCAAATCAAACAGTTGATACGAGGACATATGGGAGACAGCTGGGAAGAGTACCTGGATATTTATGTGTTTGGTGTGGGAGACGAAATAGAAGAAAACGAGATAAACAAAATGGTGACGCACAAACACGCTGAGAAGCATTTCTTCAAGATGGCTGACATAAAGACTCTGGAGCAGACGTTTGATGACATCATAGaTGAGAGTGACAGTGTTGGCCTGTGTGGGCTCTACAGGAGCTATGATAATCCATTGGACACCAAGAAAAGCAAAAGACAGATGTACCCCTGGCTGGTTACGATTAAGATCACTCGTCCCTCAGGAATTGAGTCCTGTAAGGGTTCGCTGGTCAGTCCGCGCTTCGTCCTCACAGCTGCTCACTGCTTCCGCACAGGTGACAAAGCTGGAGATGTGAAAGTCATCATCGATGACAATGAGGTGGAATCAGGGGCTTCAGAGAAACAAATAATTGGGATCATAACCCATCCCCAGTTCAACCCAGGACTGAAGGCAGACCAGGGGATCCCAGAGTTCTATGATTATGACATTGCACTTATTGAGCTGCAGGAGGACGTCAAGATCTCACGACAAGCCCGacCTATTTGCATCCCCTGTACTAAGAGCACCAGCCGAGCTTTGGGGCTGTTCGGTGAGGTGACCTGTCAGCAACACaAGGAGGCGCTGTACATGCAGACCTTGGAGCTGGCCTCCTTCATGTCCGAGGTGAAGAACGAGGTGGAGAAGAAGAATGTTCGCATCAAGCTGAGGGGGCAGAGGACCATCTGTATCAGGGATGCACTCAAAGCCCCTGGGGTCACAACCTCTGAACCCACGGAGATCGTGACGGACCGGTTCCTGTGTACTGGGGGCACTCAGCCTGAGAAAGATGACATCACCTGCAAGGGTGACTCTGGGGGAGCGGTGTTCATGGAGAGGAGGAGGCGTTTGATCCAGGTTGGGGTGATTAGCTGGGGAAACACGAACCTGTGCGGGGCAAGCGGAGTGCGCGAGGGCCAGCAGCCTGACTCGGCCCGGGACTATCACATCGACCTGGCTGCTGTGCTGCCCTTCCTCAGACAACACCTGGGGCAGCAGGGCGCGGAGCAGCCCGGCAAGCTGGAGTTCATTGACTGAGAGAatggggggggaagggggagaaACAGATGTGACAGAAGGCAGGCTCTAAAGCTCTGGGAGAGATGGACACACAGAGGTGGAAGAAACAAACCAAGAGAGACACAGGACCGAGAGTAATCCCTCTTGTACCACACCAGTCCTGTATGTAAAGACTGAGGAGTTAATTTGATCTGtgtaataaaaccacaaaaaacaaaaaacccttCTTGAGCCCTGTGATACACAAACACCTACAGAGAGACAAACAAGCCTGACATCTGCAGAGACAAGtggagagaaggacagagactTCATTTGGACAGACCTTTATTTGCTGCAGCACAACGGTCTGTGCGGCGCCCCCGACAGCTTAGCAGGCAACCAAAgccaaacaacaaacaaaacccttaACAAAAAAGTTTCCACATTTATAGGACAGGATTGCAGGGATCCAtccgttttgtttttaattgtactttCTGAATTCAcgctttttaaataaagtccTCCCGTCAAAAGAAAGCAGAGGCGCGTCAGTCTGTGTTCGGGGTGCTGTAACAGGCAGTGACCCAGACTGGACAGGACTGAATGATATCACACTGGACTGACCCAGACGAGaatgcactggactggactaagCTAGAACTGGATTCAAATGGAATGAACTGGACTTTACTATGCTGCACTGGACTAGACTGAACTGTACTATAGTGGTCTTATCTGGGCCGCTGCAGCACTGGagggctggactggactagactgggttaaagaaacaaacatgacaGGCTTAATGAGTTCAGACCTGGTCCCTAGGCACTGATTTAGCCAGTCCAGTACAGTGTGATATTGCACAGAGCACTCCACAATATGCCAGGTCAACAGTGTAGTCCGTTTTATAGCAGTCAaacacagtccagtccactccTGCAGAAACCGGTCCGGTCCTGTCGAGCATTCCTCCAGCGTGGACATGATGTGGGCCAGTCTTGGTCTCAGTGGAAAAGGTCTTCGCTGTAAACCACCTGGTTCCTCTTGTCTCTGTAGGAGCCTTTGGCACTGTTCTGCAcagCCAGCGAGGCCCAGACGGACTTCCCCGTGGCCGCCTCCAGCATGGGCTGCTTCCGGGCGATGCTGACCTTCACCGCCACGTCCCCCACCACACTGCCGTTCAgCTCGGCCACTGCCTGGTCTGCAGACTCCATCTTTTCAAAGGTGATGAACGCacagTTGCGTGGGGAGTCCATGCTGAGGTGGATGATGTTGCCGTGGGGGGAGAAGGCGGTGCGCAGGCTGTCCTCACTCAGCCCCCCcccatacacatacacagtgttCCCCTTCCTCACCCCCCGCCGGTCCGGACATGAGTctgagcGGCGGAAAGGTGcgtctctctctcggtctcggTCGCGCTCTCGGTCGCGCTCTCTGCCCcggtctctgtccctctctcggTCTcggtctctgtccctgtccctgtcccggTCTCTATCGCGCTCCCTCTCCCGGTCTCGTTCTCTGTCCCGGTCTCTGTCCCGCTCCCGATCTCtgtcccgctctctctctctgtctggctcccgttctctctccctctctcctggcTCACGGACAGAGgtagaagaggaggaggaggtggaggaaggggtggccacccccccaccttcctCGTCATCACGGGAACGCTCGCCTGAGCTGACAAagCTTTCATAAAGAGATTTTCTGTGGGGGCGTTTAGACTCAGGCATCTCTTCATCCGTCGACACGCTCCTTTGAAACGGAAGGAAAGCTGGAATAGGGCCCTTCTCTGGGTCCTTGAGCTTGCCCTCCAGTGTTCTCGAGCGCTTGAAGCCGGAGTTCTTGTTCTCGGACTTGATGGCGCTGATCGCCCCGGACTTGATCAGCATCTTGGCCTGCTCGGTGGCTGTAGCTGTGTCAACCACCGGCTGGTCAGAGAGAGCTGCGCTTCAGTCCTCCCTGGGTGGCCTGGCTGGTGGAGCTCTGTTTCTTCAGGGCCAGAAGAGCCTTTTTCTTCTTCTTGAGCTTAGCGTATTTCTTCTGCAGGGACTCCTCCTCCTCGGTGAGGGAGGTCGGGAACAGCACCATCTCGTAGCAGCACTGCACAACAGCACATTACAGCAGAGTACAGCAGAGTACAGATATGACGTCATCTACCGGAGGCGGAGACGAGCGGGCGGTTCAGATAATTTTATGATTGGTTTAAAATGTCGTCGTTCTGCCTAGCAGCCGGAAATACAAACCCCGCTGCAGCCGTTTCTAAACGGCCGAGAGAGGAGCTGCCTGGGCGAGAGCAGCGGATTGTCTTTTCTCTTCCGCCCCTCAGGCTGCGCACGCACAGCAGCCCCATCCGAGACAACAGCTTCCGGGTCGCGGCTGTCAGGCCGGTGATGGCGAGCGACGCGCAGAGAGTCGTGTTGCCCGCAATGGGGCCGTCCGACCTCTCCCTGTCTGTGCTGGAGATGGGCTGCTCCGGGTCGTTTGAGCTCCTCTCTCGACCAATGGGCAGCTCTGAACCCCTGCTGCCACAATCCACACTTCCCGTGGGTCTCCCGCCCTTTGCCCCCCCGCTGCTGTCCGAAGTAGAGAGCCGCTTCCTGAGGGACCCGGCCTGGCTGCCTCTGCACTGCCCCCAGCTTGCCTTCAGCTCTGGACGCacGGCACTGAAGAGGGACAGACAGCCACACTCTCTGCTGCAGTGTGGcgtctctcctctccactcctcccTCTCCGTCGTCAGACACCCCACCACTGGAGAGCTGCTGGACTTCACTGAGgaGTTGTCAGAGGACACAGGCCTGTCCTGTAAGAACTCCCTCTCTTTCCTGcggccccccggcccccctGGCCAGACCCTGAGAGGCAGCACTACCAACTACCCCTTCCTGCCCGgcGGCATGGAGGAGCTCAGTCTGGACCAAATAAAGAAGAAGACCCAACTGGAGGAAGACATAGACTTTGAGAAcaaccTGCTGTCAACTCCCCCCGGGTTCAACAGAGGAATGGACTTCACTAACTCAGagcCCAAGGGCACGCCCAGTGAGGTCAGCCTGCTGTCCCTGCTGTCCAGCTTTGATGACATCATTGACGGGCGCCCTGAGCATGGAGAACAGGAGGAGAAAAAGCGAGGAGAAGagaagggaggggagaggaaggtGCAAAGGAGCAACAGCTTAGAGGAGCTGGGAAtaaagGATGGGCTGCCTCCAGTCACCCCCTCCGCACGTAGAGCgaaagaggaggaagagaagaagaaaaaagaggaGCAGGAGAAcaagaaggagggagagagggagcgatgGGCAGTTCCAGTCGACATCAACACCCCCTGTGAGGATTTCCACAAACGCATCCCTGACCCAGCCTTCAAGTGGCCGTTTGAGCTGGACGTGTTTCAGAAGCAGGCCGTGCTGTGTCTGGAGAAAGGCCAGTCTGTGTTCGTTGCCGCCCACACCTCCGCTGGCAAGACTGTGGTGGCCGAGTATGCCATCGCTCTCTCCCAGAAACACATGACCAGGACGATCTACACCTCCCCCATCAAGGCTCTGTCCAATCAGAAGTTCAGAGACTTCAAGGGCACGTTCGGTGACGTGGGGCTGCTGACGGGAGACGTGCAGCTCAACCCCGAGGCCTCCTGCCTGATCATGACCACAGAGATCCTCAGgtcGATGCTGTACAATGGCTCAGACGTGATAAGAGACCTGGAGTGGGTGATATTTGACGAAGTTCATTACATTAATGACATAGAGagaGGGGTGGTGTGGGAGGAGGTGCTGATCATGCTGCCAGAGCACGTTGGGATCATCCTGCTGAGTGCCACTGTGCCTAACGCCCTGGAGTTCAGTGACTGGATTGGgcGCATAAAGAAGCGGCAGATCTTCGTGATCAGCACTCTGAAGCGGCCCGTACCCCTGGAGCACTTCCTGTACACGGGCAACAGCAGCAAGACCCAAAAGGAGCTCTTCCTGTTAGTGGACTCCAACGGGACCTTCCTCACCaaaggGTATTATGCAGCAGTGGAGGCAAAGAAGGAGAGGACCAGTAAACACGCTCAGTCATTTGGAGCCAAAACTGCATCCCAGAACACCACCCCCAACCAGgacCGGGCGGTGTGGCTGTCTCTGCTGTCCTCCCTGTCTCAGCGGGACCAGACCCCCGTGGTGGCCTTCACTTTCTCGCGCACCCGCTGCGACGACAACGCGCGCGCCCTTTCCTCGCTGGACCTCACCTCCTCCGCCGAGAAGAGCGAGATCCACTGCTTCTTCAACAAGTGCATCACCCGGCTCCGCGGCAGCGACCGCCAACTCCCCCAGGTGTTGCAAATGATCCAGCTGTTGAAGAAGGGCATTGGAGTTCATCACAGCGGGATCCTGCCAATCCTGAAGGAGGTTATTGAGATGCTGTTCACCCGAGGGCTAGTAAAGGTGCTGTTTGCCACCGAGACCTTTGCCATGGGGGTGAACATGCCGGCCAGGACTGTGGTGTTTGACAGCATCCGGAAACACGATGGCACCGGCTTCAGGGACCTACTGcccgGGGAGTATATCCAGATGGCCGGCCGCGCTGGACGCAGGGGGCTGGACACCACGGGCACAGTGATCATCCTGTGCAAGGCGGGGGTGCACGAGATGAGCGACCTGCACAAGATGAtgctgGGGAAGCCCACGGTGCTGCAGTCGCAATTCAGGCTGACCTACACCATGATCCTGAACCTGCTGAGAGTGGAGGCGCTCAGAGTCACAGACATGATGAAGAGGAGCTTTTCAGAGTGCCACTGCCGCCGAGACGCCCAGTCCCATGAGAAGAGGATTGCTCAGCTGAAGAAGATGCTGTCCTCCCTGCCCCCCATTGACACAGAGGGACAGCTGGCTGACCTGGTCACCTACTACCACACTGTGAGAGAGCTCACTCTGACCAGAGGCACACTGCAGaaGGCCACGCTGGAGTCGGTGAATGGGGTGAAGGCTCTGTCTGTGGGCAGGGTGGTGGTGATCAATAACTCTCAACACACTAATGCCCTGGGAGTCATTTTACAGgtCTCCAGTGACTCAGCGAACCGCACCTTCACTGCGCTGGTCCTGTGTGAGAAAGACGGAGAGGGGACCCTGAAACCTGACGCTGCCCCCACACCCCCGAAATCCCCCCAGCTCCTCTGCAGCACAGCCCTCTTTATTCCAGAAGGCCCCTGTGGTCACACGGTGCAGAAGATCCGGGCCGAGGATGTGACGGGCATCACAGTGAAGACGCTCAGAGTCGCCCCAGACCGCATCATCGACAACTTCAACAAGAGACAGATGCCTCGCTTCaagctggaCCCTCCTGGCCAGGCCATCTCCACAACGACGCAGGAGCTGCTGCGACTGGCTGAGGCCAACCCAGATGGGGTCGCGACCCTTGACCCCGTGAACGACCTGCAGCTGAAGGGAGTGGAGGTCGTGGAGGCGTCGATGAGGCTCCGCATCCTGCAGGAGAGTCTGGGCCAGTTCACCTGTGTGCACAGCCCCCGGTTCTCTGAGGAgttcTCTCGGCTGCAGGAGAGGATGGTcctgcaggaggagctggacAGGCTGCAGTTCTTGGTGTCAGAccagtctctgtctctcctgccCGAGTATCACCAGAGGGTCGAGGTGCTCAAGTCCCTGCAGTACGTGGACGCGGGCGGAGCGGTGCAGCTGAAGGGCCGGGTGGCCTGTGAGCTGAGCTCCCACGAGTTGCTGCTGACGGAGCTGCTGTTCGAGGGTGCGCTCAGCTCCCTGCCCCCCGAGGAGAGCGCCGCCCTGCTGTCCTGCCTGGTGTTCACCCAGAAGACGCAGGTCACCCCCGAGATCAACGCCTCGCTGCAGGAGGGTGTGCAGCGGGTGCTGGGTGTGGCCAAGCGGATCGCAGAGCTGCAGCGCGAGTGCGGCCTCTCCGAGTCTGTGGAGGACTACGTCGGCCAGTACAAGTTCGGGCTGACAGAGGTGGTGTACTGCTGGGCCCGAGGCATGCGGCTGGACGAGGTGCTGAAGGACGTCCGCAACGCCGCACGCATCGTGGGCGACTCGGTGCTCTACTCCAAGATGGAGCAGGCCTCCACCGCCATCAAGAGGGACATCGTCTTCACCGCCTCGCTCTACACGcactga
>TU135807
CCTCACCCCCCGCCGGTCCGGACATGAGTctgagcGGCGGAAAGGTGcgtctctctctcggtctcggTCGCGCTCTCGGTCGCGCTCTCTGCCCcggtctctgtccctctctcggTCTcggtctctgtccctgtccctgtcccggTCTCTATCGCGCTCCCTCTCCCGGTCTCGTTCTCTGTCCCGGTCTCTGTCCCGCTCCCGATCTCtgtcccgctctctctctctgtctggctcccgttctctctccctctctcctggcTCACGGACAGAGgtagaagaggaggaggaggtggaggaaggggtggccacccccccaccttcctCGTCATCACGGGAACGCTCGCCTGAGCTG

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12599 SKI2, SKIV2L; antiviral helicase SKI2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006275 True 8518 mRNA 0.57 56 1286829 1315558
TU135807 False 355 lncRNA 0.66 2 1298257 1298726

Neighbor

gene id symbol gene type direction distance location
AMCG00006269 NA coding upstream 14821 1265532 ~ 1272008 (+)
AMCG00006270 NA coding upstream 73735 1199821 ~ 1213094 (+)
AMCG00006263 NA coding upstream 138916 1143777 ~ 1147913 (+)
AMCG00006264 NA coding upstream 179113 1102780 ~ 1107716 (+)
AMCG00006262 NA coding upstream 188058 1089591 ~ 1098771 (+)
AMCG00006282 NA coding downstream 45052 1360610 ~ 1415163 (+)
AMCG00006281 NA coding downstream 108849 1424407 ~ 1433866 (+)
AMCG00006287 NA coding downstream 221349 1536907 ~ 1545850 (+)
AMCG00006286 NA coding downstream 257570 1573128 ~ 1574818 (+)
AMCG00006288 NA coding downstream 322501 1638059 ~ 1647130 (+)
G108555 NA non-coding upstream 65405 1217879 ~ 1221424 (+)
G108540 NA non-coding upstream 85148 1201294 ~ 1201681 (+)
G108519 NA non-coding upstream 93388 1162864 ~ 1193441 (+)
G108516 NA non-coding upstream 215057 1071294 ~ 1071772 (+)
G108515 NA non-coding upstream 216058 1070327 ~ 1070771 (+)
G108580 NA non-coding downstream 27994 1343552 ~ 1343755 (+)
G108584 NA non-coding downstream 34493 1350051 ~ 1397427 (+)
G108587 NA non-coding downstream 37260 1352818 ~ 1554665 (+)
G108595 NA non-coding downstream 157814 1473372 ~ 1474967 (+)
G108602 NA non-coding downstream 171754 1487312 ~ 1487870 (+)
AMCG00006276 NA other upstream 777 1278460 ~ 1286052 (+)
AMCG00006256 NA other upstream 282958 985873 ~ 1003871 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other upstream 431109 846561 ~ 855720 (+)
G108319 NA other upstream 495767 774809 ~ 791062 (+)
AMCG00006236 NA other upstream 634689 644718 ~ 652140 (+)
G108585 NA other downstream 34825 1350383 ~ 1429987 (+)
G108626 rps5,LOC107086176 other downstream 321839 1637397 ~ 1814610 (+)
AMCG00006294 NA other downstream 420374 1735932 ~ 1741336 (+)
AMCG00006366 NA other downstream 1927379 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 1959224 3274782 ~ 3286179 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_10129211_10147186 SKIV2L coding CI01000054 null 10129211 ~ 10147422 (+)