AMCG00006276


Basic Information

Item Value
gene id AMCG00006276
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1278460 ~ 1286052 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006276
ATGGAGGATGGTGCTGGGCCCGGGGGAgtggagggggaaggggaggggaaaGGGAAGGAGCTGTTGAACAAGGAGTATGAGGTGAGCAGCTTTATGACAGTGGAGGGCACCGATGTCACCAGGAAGCAAGCCAAAATCAAGCTGCTAGGCCAGAGAGACAGATGCATCAAAGACGCCCTCCTCTCCCCAAACGTCACAGCCACCGATGCCACAAAACTGGTGACAGAACGTTTCCTGTGCAGTGGGGGCACGGAGCCCACTGTGGATGACATGACTTGCAAAGGTGACTCGGGAGGAGCTCTGTTTCTGGAGAGGAAGCAGCGGCTGATACAGgtTGGGGTGATCAGCTGGGGAAACAAGGAATTGTGTAAATCtggtggaagaaaaacaaagagcgACTCCAGGGACTATCACATCAACCTGTTCACAGTGCAGCCCTTCCTCAAGAAATACCTGGGGGAGGAGACTGACAGCCTGCCCAGACAGCTGGAGTTCATTGACTAA
>TU135810
gtctattttaatttctctccctccccaggcCGATCTGTATCCCCTGTACTAAAGATACTAGTCGAGCTCTAGGGTTGTCTGGGAATGTGAATTGTGGAAAGCACGGGAAGGAGCTGTTGAACAAGGAGTATGAGGTGAGCAGCTTTATGACAGTGGAGGGCACCGATGTCACCAGGAAGCAAGCCAAAATCAAGCTGCTAGGCCAGAGAGACAGATGCATCAAAGACGCCCTCCTCTCCCCAAACGTCACAGCCACCGATGCCACAAAACTGGTGACAGAACGTTTCCTGTGCAGTGGGGGCACGGAGCCCACTGTGGATGACATGACTTGCAAAGGTGACTCGGGAGGAGCTCTGTTTCTGGAGAGGAAGCAGCGGCTGATACAGgtTGGGGTGATCAGCTGGGGAAACAAGGAATTGTGTAAATCtggtggaagaaaaacaaagagcgACTCCAGGGACTATCACATCAACCTGTTCACAGTGCAGCCCTTCCTCAAGAAATACCTGGGGGAGGAGACTGACAGCCTGCCCAGACAGCTGGAGTTCATTGACTAAGCGAGGGGTGgcgagaagagagagagagagagagagagagagagagagagagagaaatattcCCATTCCCAAGATGCATACTGGCACAGTGCTCTTGTGCAGAGGAAGCCTCACAATTTAGAGTGGGGGGGGTGAGGGTTGTGTTTCAACAGGAGCTCTCAGTTACTcttttgtataattgttttctaCCTTAATTCAAGACTTGCACACTTAACTATTAAACCTGATAACTGATCACCGTGTTCAATTTCTGGAGATATTGTGCCTGTTGACCGTTTCGGAGTCTGGGAAGAAGTGTTCAATTCagccagttaattgtttaattagatcaattaaggaaATAAGAGCTGTGCTGGAACATTACCCAGAAGACACTGGGGCCCCTCTAGGCCAAGAGCCTGTGTAGtctgtagtgcagtgcagtctctCGTCTCGGCAATTCTAGTTCTTTAGGGCTGAAGGGGCTCTTAGTTTGCATTTTGCCTCAGGGTCCTCATTATTACTGACGTGAGTGTTAGGACACAAATTTAGATCACCTCTTGATTCAGTGATCAGATAGTCCATTTACCCCTGCTGCACGGAAGCAGCTGTACGATCGGACTCAGGATGAGAACAAATCCCAAAGGACGGACCTGTACAACTGATACAGCAAAATGCCATAGGGCACaagtttgttatttatgatttatgtcaaggtcaaagttttgatttggtctggcccTTAGATATGATGAGTGTATtactaatcatcatcatcatcaaaattatcataataatcatcatcatcatcatcatacattGATaagcacacacagagacaagcaCACATGctaacacatacatacacaaacacacacatacatctaaacagacacaatcacacacacacacacacacacacaaacacaagcatacacacacagaaacacacacacgccaagacatacacatacaaatgcaaaattcaGCTTCGAGGAACAGAGATAGCCTGAATTAAATTATCGATTTAACTGAATCTGTCTGATTAGCCTAAATTAGTTGAACCAGTTACTAGGAACAGGGCACTGGTGTTCAATCATATTGTCCTGGAGTTCAGTCATAATGTCCTGGAGTTCACTCACACTGTCCTGGTGGTCACACTGTCCTAGTGTTCAGTCACACTGTCCTGGAGTTCAGTCATATTGTCCTGGTGTTCACTCACACTGTCCTGGTGGTCACACTGTCCTAGTGTTCAGTCACACTGTCCTGGAGTTCAGTCATACTGTCCTGGTGTTCAGTCACACTGTCCTGGTGTTCAGTCACACTGTCCTGGTGTTCAGTCATATTGTCCTGGAGTTCAGTCATATTGTCCTGGTGTTCACTCACACTGTCCTGGTGTTCAGTCACACTGTCCTGGTGTTCACTCACACTGTCCTGGTGGTCACACTGTCCTAGTGTTCAGTCACACTGTCTCAGGGTTCACTCACACTGTCCTGTGAGTCACATGGTCCCACACGGGCCAGAGAGGGGGTGGAAAACAAAGGGCAATAGAAAATCTACAGCACacttacagtacagtgtcaCACAGCAGGCAACACAGGGCCTGTGCTGTGGATGAACACTTGTGGGCAGACAGGACTGAGACGGGAGATGCTGCCTGTGTGTATTCGGTTTGATCATGCAgttatgttttttggggggtggagggTGCGGTTTGGGTCTTTCTCTCtggacacatttaatttttgctcacagatactgtacactgtatagctgtgtctgaaaataaatgttttgaacaaaatattttcttgatATGTTGCGTTTGTGTGTTCACGTGAATTCTGTTGGTAGTGTTTTGCATTGTCAGTTTCCAAGAAATGTGTGTAAACAATTGAGAAATACTGTAAAAGTTTAAATGCAATGGGATTAAAGTAAAGTTAACAAACCAATGGC

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006276 False 504 mRNA 0.55 5 1278460 1284012
TU135810 True 2492 TUCP 0.45 6 1280701 1286052

Neighbor

gene id symbol gene type direction distance location
AMCG00006269 NA coding upstream 6452 1265532 ~ 1272008 (+)
AMCG00006270 NA coding upstream 65366 1199821 ~ 1213094 (+)
AMCG00006263 NA coding upstream 130547 1143777 ~ 1147913 (+)
AMCG00006264 NA coding upstream 170744 1102780 ~ 1107716 (+)
AMCG00006262 NA coding upstream 179689 1089591 ~ 1098771 (+)
AMCG00006282 NA coding downstream 74558 1360610 ~ 1415163 (+)
AMCG00006281 NA coding downstream 138355 1424407 ~ 1433866 (+)
AMCG00006287 NA coding downstream 250855 1536907 ~ 1545850 (+)
AMCG00006286 NA coding downstream 287076 1573128 ~ 1574818 (+)
AMCG00006288 NA coding downstream 352007 1638059 ~ 1647130 (+)
G108555 NA non-coding upstream 57036 1217879 ~ 1221424 (+)
G108540 NA non-coding upstream 76779 1201294 ~ 1201681 (+)
G108519 NA non-coding upstream 85019 1162864 ~ 1193441 (+)
G108516 NA non-coding upstream 206688 1071294 ~ 1071772 (+)
G108515 NA non-coding upstream 207689 1070327 ~ 1070771 (+)
G108580 NA non-coding downstream 57500 1343552 ~ 1343755 (+)
G108584 NA non-coding downstream 63999 1350051 ~ 1397427 (+)
G108587 NA non-coding downstream 66766 1352818 ~ 1554665 (+)
G108595 NA non-coding downstream 187320 1473372 ~ 1474967 (+)
G108602 NA non-coding downstream 201260 1487312 ~ 1487870 (+)
AMCG00006256 NA other upstream 274589 985873 ~ 1003871 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other upstream 422740 846561 ~ 855720 (+)
G108319 NA other upstream 487398 774809 ~ 791062 (+)
AMCG00006236 NA other upstream 626320 644718 ~ 652140 (+)
AMCG00006231 NA other upstream 844555 426976 ~ 433905 (+)
AMCG00006275 NA other downstream 777 1286829 ~ 1315558 (+)
G108585 NA other downstream 64331 1350383 ~ 1429987 (+)
G108626 rps5,LOC107086176 other downstream 351345 1637397 ~ 1814610 (+)
AMCG00006294 NA other downstream 449880 1735932 ~ 1741336 (+)
AMCG00006366 NA other downstream 1956885 3242937 ~ 3252080 (+)

Expression


Co-expression Network