AMCG00006277 (prrt1,LOC108272790,LOC107694357)


Basic Information

Item Value
gene id AMCG00006277
gene name prrt1,LOC108272790,LOC107694357
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1337187 ~ 1341665 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006277
CACCCCCAACACCAACAGCACCCCCAACACCTGCAGCAGCACCCCCACGCCCAACACCACCCAGGGCCCGAGGGATACATGCAGGAGACCCAGTTCCACAGCCAGttcccccccccgccctccggtcccccccccccagctccccAGGGCTACACCATCCAGACCCAGGGGGCGAGCGGAGCCATgcacccccccccgcccccggcCGGGTACCTCCACCCTGGGTACCCCCTTCAGCTGCAGCCCTGCACTGCCTACTTGCCTGTGTACCCACTGGGGACCTCTATGCCCCTGCAGATGCCCCCTGGTATTACTCTGATGGAGCCACGCCGCCCCCCCCATGATTACCTGCCTATTGCTGTGCTGACGACTGTGCGGACGGCCATTGCCCGTGGCGACATGGTCTCTGCAGAGATCGCGTCTCGTGAGGCACGGAACTTCTCGTTCATCAGCCTGGCTGTGGGCATCGCCTCCATGGTCCTCTGCACCATCCTCACTGTCGTAGTTCCCATCCCCACCTCAAACTCGTGA
>TU136062
CTGGGTACCCCCTTCAGCTGCAGCCCTGCACTGCCTACTTGCCTGTGTACCCACTGGGGACCTCTgggCAACCCTACATGCAAGGGGGGCCAGGGCATCCAGGAGTTGCCCCAGGGCAGATGCCCCTGCAGATGCCCCCTGGTATTACTCTGATGGAGCCACGCCGCCCCCCCCATGATTACCTGCCTATTGCTGTGCTGACGACTGTGTGCTGCTTCTGGCCCACAGGCATCATCGCCATCATCAAGGCTGTGCAGGTGCGGACGGCCATTGCCCGTGGCGACATGGTCTCTGCAGAGATCGCGTCTCGTGAGGCACGGAACTTCTCGTTCATCAGCCTGGCTGTGGGCATCGCCTCCATGGTCCTCTGCACCATCCTCACTGTCGTAGTCATCATTGCCTCTCAGCACCACGACGACGAGTGGGAGCCCTAGCGATCACGCTCAGTAACCGTGGCAACCGCCTCCAGAGGACCACTGGAGGGACCAgacttactgacacactgactgactgacacactgactgactgacacactgactgactgactgacacactgactgactgaatgacacactgacggactgactgactgacacactgacggactgactgacacactgactgactgacagactgacacactgactgtctgactgactgactgactgatacactgactgactgacacactgactgactgactgacacactgactgactgactgactgactgattgacacactgactgactgactgattgacacattgactgattgatagactgactgaatgacacactgacgGACTGAttgtctgacacactgactgacacactgactgactgactggcacactgactgaacaACACACTGACTCATAGACTGACTGAacgacacactgactgactgacacactgattgactgactgacacactgactgattgactgactgactgatagtctgactgaatgacacactgactgactgattggcTGACACAttgaatgacacactgactgactgactgacacactgactgaatgacacactgactgactgattgacacactgactgaatgacacactgactgactcagtTTTACAGTATTCACCAttagttttgttaatttgtggATTACAAACTTGAACCTGTTTTCTACTGCACtcatgttttttcatattttaaggATTGGATCTTATGGGGATGACAAAAGCCATGATCAAACAATGCATTCTTGGGACAAATAACAGCAACATTTGaagaaaagcatatttttgGTGTCGTTTCATAAGGAAGGTTCCCTTTTCTgtgtttggaaaaacaaaatggaatccATTTGTAGAATATTCatcaaaataacatgaaatgcaATGATGAGGCCCTTCAAACACACAGCCTTCGGAGAGACACCGGActcaatacaatatatacaaatgtcatCAATATCTACATCTACTGTCCACTAGGTTTCACTCCCAGGATGTCACTGGTGATATTTTATCAACCCGTGTTCACCTTTTTCACCTACGATATAATCCTCAATCCGTGATTCCCAGAACTGGTGAAAGCGTTTAAGTATTTTAAGTCTGTGTACATTTCAacacaaataagaaattaaaaggcTTTTCTGCTCTGGAATCAATTCAGAGGAGTGCGACCAGGGTGCTTCCTGGTCTTAAAGGACTGTCCCAAGCTTCAGCCTGGAAGAGAGATGATTATGAGGGGACTTGATAGAAGAAGTGCTCGACATCCTAAAAGAGACCCAAGTGGCTTCTTCGCAGTGGACAGGGCCATCAGGCAgggcttcttcacacagagtgtTGTGGGAGTGTGGAACAGGTTCCTTCAAGAAGAAGGCTGATGATATGCTTGACTCAATTAGTAGGACCCTGTGATTTGCATGACTCAactttttaaacagtgtttcaGTCATGTAAAATGCAAGGCCCTAGTATCAACAAGACAAACCAAAAGAGAAATGTGTGCCACACTGCCTCCACTCGCCTTCTGTGTCACATGGTCACAAAATCTCACAAAATCTCCTCCATTAACAGTCTGCTTTCAAATCTCCTGAGGCTCTCCTGTGAAGGTTCCCATCCCCACCTCAAACTCGTGACACTGCATCAATAGCAACCAAGAGGGCAGCCTGACAACCACCTCAATCATTTCTAGGAACGACTGACTTATCTACTTGACAAGCTGATTCATTGATGGATTGACTAACtcatacactgactgactgactgactaactgaacAACTAATCACTTGATACTTGACTGACTGAGTGgtacacagactgactgactgactgagtggtACGCTGAGTGACTTGACCACAACCCTCGTTGCCAGACTGACCAAAATACAGCAAACCAATCCACAATGTGATCCGCTGACGTGCCAAGCTCACCACATCAACCCTTCGATGGATTCCAGCACGGACTGGGACAGAGAATGAACCGAGTCCTTAACCCACGGATGCGACTGAACAGACTATTACTCTGGTCTCGAGGAGAGGAAGTTGATTTGCAATGAAATGCCAAATGCTGGGATGAGATGAGAACAAGAAAATAGTGGAATGATAGTGTAGGGAGTTAACGCTGATTCCAAGCCCCTTACAACTGAGTTACTGAGAAATATATGCTTTTACTGCCAAACACAACATGcactggagggagagagatcgAATTGTAACTGGAACTCCACTTGCCACACGAGCCACACGAGTGACATCTGCTGTACAGCTGGGTTGACAAACGGCCTGGGGGAGAGAACGAGGTTTGTCTATAgtgtataaaataatagtaCAGGAataggagggagagggagagggagagcgcacgacatacagttttgtttgaaaaGATGCAGTAATAATTAAAGTTTGAGTGCGTATGAGAGACACGGGGAGATGGTTAAAGTGAATTATTCCTACTTGCTTGCTCTGTCACTCTGCCTCTTTTTTCAgtgcctctctctttctccctcttgcCTTCTGCCCTCCCCTATGTCATAGACCGgtctctctgtcttcctccctccctcatcATCACTCTTTTCCCCTCCTATTCTCTCCCTCCCATC

Function

symbol description
prrt1 Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human PRRT1 (proline rich transmembrane protein 1).

NR:

description
PREDICTED: proline-rich transmembrane protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006277 False 531 mRNA 0.66 4 1338157 1341665
TU136062 True 3089 TUCP 0.47 4 1337187 1341445

Neighbor

gene id symbol gene type direction distance location
AMCG00006278 nelfe coding downstream 36544 1298837 ~ 1300643 (-)
AMCG00006280 NA coding downstream 39217 1293396 ~ 1297970 (-)
AMCG00006273 NA coding downstream 75608 1248142 ~ 1261579 (-)
AMCG00006272 NA coding downstream 137193 1193270 ~ 1199994 (-)
AMCG00006271 NA coding downstream 146106 1181710 ~ 1191081 (-)
AMCG00006285 NA coding upstream 152695 1494360 ~ 1498054 (-)
AMCG00006283 NA coding upstream 208778 1550443 ~ 1555554 (-)
AMCG00006291 NA coding upstream 254007 1595672 ~ 1599457 (-)
AMCG00006290 NA coding upstream 336597 1678262 ~ 1683356 (-)
AMCG00006299 NA coding upstream 351578 1693243 ~ 1709505 (-)
G108752 NA non-coding downstream 5143 1328802 ~ 1332044 (-)
G108750 NA non-coding downstream 15974 1320698 ~ 1321213 (-)
G108682 NA non-coding downstream 30307 1292038 ~ 1306880 (-)
G108717 NA non-coding downstream 135506 1180582 ~ 1201681 (-)
G108705 NA non-coding downstream 217489 1109651 ~ 1119698 (-)
G108756 NA non-coding upstream 8420 1350085 ~ 1397331 (-)
G108760 NA non-coding upstream 63728 1405393 ~ 1409747 (-)
G108770 NA non-coding upstream 162533 1504198 ~ 1560390 (-)
G108772 NA non-coding upstream 195279 1536944 ~ 1542361 (-)
G108790 NA non-coding upstream 320088 1661753 ~ 1663033 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other downstream 121003 1211286 ~ 1216184 (-)
AMCG00006266 NA other downstream 199235 1134901 ~ 1137952 (-)
G108708 NA other downstream 202497 1126562 ~ 1134690 (-)
AMCG00006247 NA other downstream 462693 838855 ~ 874494 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 588451 726064 ~ 748736 (-)
AMCG00006292 NA other upstream 2851 1344516 ~ 1637731 (-)
G108755 NA other upstream 8820 1350485 ~ 1554664 (-)
AMCG00006279 NA other upstream 16732 1358397 ~ 1510540 (-)
AMCG00006284 prrc2a other upstream 131813 1473478 ~ 1493970 (-)
G108784 NA other upstream 304815 1646480 ~ 1660004 (-)

Expression


Co-expression Network