AMCG00006278 (nelfe)


Basic Information

Item Value
gene id AMCG00006278
gene name nelfe
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1298837 ~ 1300643 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006278
GGGGGAAGACTTGCAAGTTGAACCGACAAGGTAAAAGTATATctactgttattattagtagtagtagtattatagtGTAACAGTCGCGCggttatatattaattttattttgcacattcgTTTATATAAAAGTGCGCGTGGTTATATggatatttattataataatagccTACTTATTAttaggctgttattattattgttattaattcgTCTGATTTCCACTGTTTCACTGTAATTACAGACTAACACAGAACTGTAAAAGCACAGCCTACATTGCTCTGTCGCTTATATTATAACCCCAAGACTTCCGTGTTCAAATACAGCAGTTCTTCCCTTGACTGGCGTAATGCAGTGCATCGCTTTAGTCTGTTCGTGTTGTTTTGTGTGACCCACTTACATTCAAAGAGATATTTACGGGGACAATATATGAAGATGTTTTACGTAACTGGACATGAGTTATGGTGCAGCACTTACAGCGAGAGTAGTGTGGTTTAGTGGGatgcaatacagtgcagtaaagtgcagtTTTAGCAAGTACCTGTACTCTGCTGTACTCTGCTGTAATGTGCTGTTGTGCAGTGCTGCTACGAGATGGTGCTGTTCCCGACCTCCCTCACCGAGGAGGAGGAGTCCCTGCAGAAGAAATACGCTAAGCTCAAGAAGAAGAAAAAGGCTCTTCTGGCCCTGAAGAAACAGAGCTCCACCAGCCAGGCCACCCAGGGAGGACTGAAGCGCaCTCTCTCTGACCAGCCGGTGGTTGACACAGCTACAGCCACCGAGCAGGCCAAGATGCTGATCAAGTCCGGGGCGATCAGCGCCATCAAGTCCGAGAACAAGAACTCCGGCTTCAAGCGCTCGAGAACACTGGAGGGCAAGCTCAAGTCTAAACGCCCCCACAGAAAATCTCTTTATGAAAGGTGA

Function

symbol description
nelfe Predicted to enable RNA binding activity. Acts upstream of or within positive regulation of hematopoietic stem cell differentiation. Predicted to be located in nucleus. Predicted to be part of NELF complex. Orthologous to human NELFE (negative elongation factor complex member E).

NR:

description
PREDICTED: negative elongation factor E

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006278 True 921 mRNA 0.44 5 1298837 1300643

Neighbor

gene id symbol gene type direction distance location
AMCG00006280 NA coding downstream 867 1293396 ~ 1297970 (-)
AMCG00006273 NA coding downstream 37258 1248142 ~ 1261579 (-)
AMCG00006272 NA coding downstream 98843 1193270 ~ 1199994 (-)
AMCG00006271 NA coding downstream 107756 1181710 ~ 1191081 (-)
AMCG00006267 NA coding downstream 119773 1171681 ~ 1179064 (-)
AMCG00006285 NA coding upstream 193717 1494360 ~ 1498054 (-)
AMCG00006283 NA coding upstream 249800 1550443 ~ 1555554 (-)
AMCG00006291 NA coding upstream 295029 1595672 ~ 1599457 (-)
AMCG00006290 NA coding upstream 377619 1678262 ~ 1683356 (-)
AMCG00006299 NA coding upstream 392600 1693243 ~ 1709505 (-)
G108717 NA non-coding downstream 97156 1180582 ~ 1201681 (-)
G108705 NA non-coding downstream 179139 1109651 ~ 1119698 (-)
G108689 NA non-coding downstream 197545 1040218 ~ 1101292 (-)
G108664 NA non-coding downstream 340159 953292 ~ 958678 (-)
G108655 NA non-coding downstream 365012 933515 ~ 933825 (-)
G108750 NA non-coding upstream 20055 1320698 ~ 1321213 (-)
G108752 NA non-coding upstream 28159 1328802 ~ 1332044 (-)
G108756 NA non-coding upstream 49442 1350085 ~ 1397331 (-)
G108760 NA non-coding upstream 104750 1405393 ~ 1409747 (-)
G108770 NA non-coding upstream 203555 1504198 ~ 1560390 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other downstream 82653 1211286 ~ 1216184 (-)
AMCG00006266 NA other downstream 160885 1134901 ~ 1137952 (-)
G108708 NA other downstream 164147 1126562 ~ 1134690 (-)
AMCG00006247 NA other downstream 424343 838855 ~ 874494 (-)
AMCG00006245 LOC106569953,LOC106588396,LOC107101422,LOC107103722 other downstream 550101 726064 ~ 748736 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other upstream 36544 1337187 ~ 1341665 (-)
AMCG00006292 NA other upstream 43873 1344516 ~ 1637731 (-)
G108755 NA other upstream 49842 1350485 ~ 1554664 (-)
AMCG00006279 NA other upstream 57754 1358397 ~ 1510540 (-)
AMCG00006284 prrc2a other upstream 172835 1473478 ~ 1493970 (-)

Expression


Co-expression Network