AMCG00006282


Basic Information

Item Value
gene id AMCG00006282
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1360610 ~ 1415163 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006282
ATGGCGCAAGGCAACGTCACAGAGCTGCCCACCACCCGGTACACCTGCTGTATCCCATCTAtgaagggagagacagagtgtgGGAGAAACAAAGTTTGCAGCACGTTTGAATTAAACCCTGAGATACAGAAAGaggagagacaaagagagagacagagagagaagagaatgGAAAGGCTTGTTTTAGCACTGATAGTAGGTTCTCTGTCAAACACCAGGAGGTCCTGCACTGACGCCCCTGCCAGCAGCACAGTGGACACAGGCCAGCTGAGGAACAGCCTCTGTTTGTCCAGCTCAGAGGGAGGGCCGAGTGGAAGAGAGGAGATTAGTACCTGTGAGTTTAATGACGAGCTGTTCTCCACAGTGGGGCGGCTCCTGCTCCTGTCCTGTGTGGCTCCTGTCAGTCTGGGACCACAAGAGACACTGCGGTGGACCTACAGACAATCTCGTACCAGCCAGGCCGTGGTGCTGTACAGCTTAAGATCCCTGACTGAAACGCCTCTGAAAGGGACAGTCCCACACAGTGGGAGAGCGGTGATGTCAGCCAACTCCTCACTGCTGATACACAATGTGCAGACGGGGGACGCTGGGCTGTACTGCTGTCAGAGAGACAAGGACTCTGGACCCAAAAAGACCCACAGGACGTTTGCTCTGAACACACTGTCAGGGAACAGCCTGCAGGGTGGCACCAGTGAGCGCAACAAGAGCACCATCAGCTCCCAGCTGGTCCTTCAGCCCCAGAGCTCTGAGAGGATCCGGtgcagtgtggagagagaggggctggaGAGAGTGAGCCAGGACTGGACCATAAAGATAGAGGCTGGACCAGGTCCGGCAGGGTCTGCAGTGGAGCTGGCGGTGAGACTGACTGTGTTCTTCATCACTCTGATCGCCCCTCTGGTCGCTGGAGCCGTGGTTTACACCAAGAGGAGGAGCAGCACACAGACAGGGACCCTGGCGATCTGCGCTGCTGCCCTCCAGCTCCGCTGCGCTTCTCCTGCGCTACTCGGACCAACCCCAATTTATAGGCTCCTCCCACCGCCCCAAGTACCCCCTCACCCGTCCTGCAGTGAGAGGATGGCTGTGGACAGTGAGAGAGGActtctactgctgctgctgctgcttagCAATGCCGCCCCCCTCACAGCTGTAGTCCTGTACTCCACTCTGGGTGCCTCAGTGACAGTGCCTTGTGACGGACTGACAGAATATGACAACTCCTATATAGTCTGGGTGTTTGCTCACAGCTCTGACACATCTGTAGAACTGAGCCGTGGTGGGATGATCACAGACACAGATCCAGACAGAGCTGGCAGACTGAGACTGGGGTCTAACCGTTATCTGCACATAGACAGACTCAGGACACGGGACACTGGAGAGTACAACTGTCATCAGCATGTCAATGGACACTTTTATGAATCTGGATCTACTGTTATTCTCTTCCTGCTCTCCATCTCTGCCAGTCCATCTGAGGGTCTGAGGGCCGGAGACAGAATCACTCTGAGCTGTGTGCTGGACTGTGGGGGGATGGTTGGAAACTGCTCTGAGACACAAGGACTGACTCTGTCCTGGAGGGACGAGAGCGGATTCCCACTGAAGGacgagagagacagatacagtATCACAGAGCTCAGGGGAGTCCACAGTCATCTCTCAGTGACACTGCGACAGTCAGACCACAACAAGAGCAGGACTTGTGTCCTGACAGAGCGAGGCGAGATGAAGACCTCTGAGTCCTACACCACTACACTCTCAGGTGTTCCAGACGAGCTGTTCTCCACAGTGGGGCGGCTCCTGCTCTTGCCTTGTGTGGATCCTGTCAGTCTGGGACCAGGAGAGAGACTGCGGTGGACCTACAGACAACCTGTTTCCAGCGCTCCAGTCACCCTCTACGAGTTACTATCCCAGTCTATTACACCTCTTAGGgggaaagacacacacagtgggAGAGCGGTCATGTCAGTCAACTCCTCACTGCTGATACACAATGTGCAGACAAGGGACGCTGGGCTGTACCGCTGTGAGAGACACAAGGACTTAAACTTGACCTGCTCCCTCACCTGTGGGTTTGACTGTGTGGAAAACACTGAACTGACCTGGAAGAACAGTACAGGGAACAGTCTGCAGGGCGGTGCCAGTGAGCATAACAAGAGCACCATCAGCTCCCAGCTGGTCCTTCAGCCCCAGAGCTCTGAGAGGATTTGGTGCAGTGTGGAGAGGGAGGGGCTGGAGAGAGTGAGTCAGGACTGGACCACAGAGATTAAGGCTGGACCAGGTTTGGCAGGGTCTGCAGTGGAGCTGGCGGTGAGACTGACTATGTTCTTCATCGCTCTGATCGCCCCTCTGGTCACTGGAGCCGTGGTTTACACCAAGAGGAGGAGCAGCACACAGACAGGACTGTCCTACAGGCCGGACACTGCAGTGACAGAGCAGAGCGGTCAGTGTGGAGCAGGACTGTCCTACAGGCCGGACACTGCAGTTACAGAGCAGAGCGGTCAGTGTGGAGGACGACTGTCCTACATGCCGGACACCGCAGTGACAGAGCAGAGCGGTCAGTGTGGAGCAGGACTGTCCTACAGGCCGGACACTGCAGTAACAGAGCAGAGCAGTCAGTGTGCAGCAGGACTGTCCTACAGGCTGGATACTGCAGTGACAGAGCAGAGCGTCAGTTTGATGAAAAGGCAGGTGTTGGAGCTGTGCATCCCCTGCAATCCCTGTGCGGACCTGGACTCACAACCCCAACTGTCTGGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006282 True 2754 mRNA 0.56 14 1360610 1415163

Neighbor

gene id symbol gene type direction distance location
AMCG00006269 NA coding upstream 88602 1265532 ~ 1272008 (+)
AMCG00006270 NA coding upstream 147516 1199821 ~ 1213094 (+)
AMCG00006263 NA coding upstream 212697 1143777 ~ 1147913 (+)
AMCG00006264 NA coding upstream 252894 1102780 ~ 1107716 (+)
AMCG00006262 NA coding upstream 261839 1089591 ~ 1098771 (+)
AMCG00006281 NA coding downstream 9244 1424407 ~ 1433866 (+)
AMCG00006287 NA coding downstream 121744 1536907 ~ 1545850 (+)
AMCG00006286 NA coding downstream 157965 1573128 ~ 1574818 (+)
AMCG00006288 NA coding downstream 222896 1638059 ~ 1647130 (+)
AMCG00006289 csnk2b,LOC101472534,LOC106588218,LOC101175345,LOC107677476,LOC106517726 coding downstream 245475 1660638 ~ 1661843 (+)
G108580 NA non-coding upstream 16855 1343552 ~ 1343755 (+)
G108555 NA non-coding upstream 139186 1217879 ~ 1221424 (+)
G108540 NA non-coding upstream 158929 1201294 ~ 1201681 (+)
G108519 NA non-coding upstream 167169 1162864 ~ 1193441 (+)
G108516 NA non-coding upstream 288838 1071294 ~ 1071772 (+)
G108595 NA non-coding downstream 58209 1473372 ~ 1474967 (+)
G108602 NA non-coding downstream 72149 1487312 ~ 1487870 (+)
G108605 NA non-coding downstream 79201 1494364 ~ 1495708 (+)
G108632 NA non-coding downstream 235892 1651055 ~ 1651459 (+)
G108831 NA non-coding downstream 474364 1889527 ~ 1890035 (+)
AMCG00006275 NA other upstream 45052 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 74558 1278460 ~ 1286052 (+)
AMCG00006256 NA other upstream 356739 985873 ~ 1003871 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other upstream 504890 846561 ~ 855720 (+)
G108319 NA other upstream 569548 774809 ~ 791062 (+)
G108626 rps5,LOC107086176 other downstream 222234 1637397 ~ 1814610 (+)
AMCG00006294 NA other downstream 320769 1735932 ~ 1741336 (+)
AMCG00006366 NA other downstream 1827774 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 1859619 3274782 ~ 3286179 (+)
G109309 NA other downstream 1946191 3361354 ~ 3365565 (+)

Expression


Co-expression Network