AMCG00006288


Basic Information

Item Value
gene id AMCG00006288
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1638059 ~ 1647130 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006288
ATGGCTGTGGACAGTGAGAGAGGActtctactgctgctgctgctgctcagcaCTGCTGCCCCCCTCACAGGTGTCGCTGTGTACTCCACTGTGGGGGGCAGTGCTACTCTGCCCTGTGAGGGAGCGACCAGTGGAATCTGTTCTTCAATTTATTGGGTCTTTCATAAGGATGATGCTGAACTGGTTGGTGGTGGGAGGGTCACAGCCAGTGATCCAGAGAGAGCTGGGAGACTGAGTGTGAAGTCTGACTGCTCTCTGCACATAGACAGACTCCACACACAGGACACTGGACATTATTACTGTCGACCACATTTCAATGGAGATGATTATCTTGTTAACCTGGCTCTTCTCAGTGttgacgTCCCTCCAGAGACAGAGCTGAAGGCTGGCAGCACTGTGACTCTGCGCTGCCTCCTGCACACTGGACACGGCCCTGGAGACTGCAGTCACCCGTACACCAGTGCTGATGTGAGACTGAGCTGGGTCTCTGAGACAGGCGCTGAGCTGCAGGGAGACACATACCAGATCTCCACTGATCACCCCTGTCTCTCCACACTGACTGTGAGGCTCCAGACCTCAGACCACAACACACAGTGGAGATGTGATCTGACAGAGGGGGGAGCAGTGAGGGTCTCTCAGAGACACACCATTAAACTCACAGATGGTTCGTCCTGGGCCTCCCTCGGACAAGAACAGGAACACCGCTGGATCAGGAACTCCAAAAGATTCTGGGTTGTCGCCACACTGCCTctgctgaaacaaaaaaaagtgtcaatATCTGCAAAGTCTACTCTAGGTCCCCCTTCAGGTGGTGAAGGGAAACCCGAGTCCAAGTTAGCAAAAGTCTGGCAAgaggaggaggacgaggagtgGCAGTGA

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006288 True 879 mRNA 0.54 5 1638059 1647130

Neighbor

gene id symbol gene type direction distance location
AMCG00006286 NA coding upstream 63241 1573128 ~ 1574818 (+)
AMCG00006287 NA coding upstream 92209 1536907 ~ 1545850 (+)
AMCG00006281 NA coding upstream 204193 1424407 ~ 1433866 (+)
AMCG00006282 NA coding upstream 222896 1360610 ~ 1415163 (+)
AMCG00006269 NA coding upstream 366051 1265532 ~ 1272008 (+)
AMCG00006289 csnk2b,LOC101472534,LOC106588218,LOC101175345,LOC107677476,LOC106517726 coding downstream 13508 1660638 ~ 1661843 (+)
AMCG00006293 NA coding downstream 68353 1715483 ~ 1721110 (+)
AMCG00006295 NA coding downstream 82679 1729809 ~ 1734311 (+)
AMCG00006296 NA coding downstream 95912 1743042 ~ 1752407 (+)
AMCG00006297 NA coding downstream 105639 1752769 ~ 1753029 (+)
G108587 NA non-coding upstream 83394 1352818 ~ 1554665 (+)
G108605 NA non-coding upstream 142351 1494364 ~ 1495708 (+)
G108602 NA non-coding upstream 150189 1487312 ~ 1487870 (+)
G108595 NA non-coding upstream 163092 1473372 ~ 1474967 (+)
G108584 NA non-coding upstream 240632 1350051 ~ 1397427 (+)
G108632 NA non-coding downstream 3925 1651055 ~ 1651459 (+)
G108831 NA non-coding downstream 242397 1889527 ~ 1890035 (+)
G108832 NA non-coding downstream 243906 1891036 ~ 1892425 (+)
G108833 NA non-coding downstream 245733 1892863 ~ 1893487 (+)
G108847 NA non-coding downstream 305084 1952214 ~ 1953042 (+)
G108585 NA other upstream 208072 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 322501 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 352007 1278460 ~ 1286052 (+)
AMCG00006256 NA other upstream 634188 985873 ~ 1003871 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other upstream 782339 846561 ~ 855720 (+)
AMCG00006294 NA other downstream 88802 1735932 ~ 1741336 (+)
AMCG00006366 NA other downstream 1595807 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 1627652 3274782 ~ 3286179 (+)
G109309 NA other downstream 1714224 3361354 ~ 3365565 (+)
G109362 NA other downstream 1856051 3503181 ~ 3506679 (+)

Expression


Co-expression Network