AMCG00006289 (csnk2b,LOC101472534,LOC106588218,LOC101175345,LOC107677476,LOC106517726)


Basic Information

Item Value
gene id AMCG00006289
gene name csnk2b,LOC101472534,LOC106588218,LOC101175345,LOC107677476,LOC106517726
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1660638 ~ 1661843 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006289
ATGCTGTACGGCCTGATCCACGCCCGCTACATCCTCACCAACCGCGGCATCGCACAGATGcTGGAGAAGTATCAGCAGGGAGATTTCGGTTATTGCCCCAGAGTGTACTGTGAGAACCAGCCTATGCTACCTATCGGTCTGTCTGATATCCCGGGTGAGGCGATGGTGAAGCTCTACTGTCCCAAGTGTATGGATGTCTACACGCCCAAGTCATCCCGGCACCACCACACGGACGGCGCCTACTTCGGCACCGGCTTCCCCCACATGCTGTTCATGGTGCACCCCGAGTACCGGCCCAAGCGACCCGCCAACCAGTTTGTGCCCCGgctgtaTGGGTTTAAGATCCACCCCATGGCctaccagctccagctccaggcagCCAGCAGCTTCAAGAGCCCAGTCAAAGCCATACGctag

Function

symbol description
csnk2b Predicted to enable protein kinase regulator activity. Predicted to be involved in regulation of protein serine/threonine phosphatase activity. Predicted to act upstream of or within Wnt signaling pathway and phosphorylation. Predicted to be part of protein kinase CK2 complex. Predicted to be active in cytoplasm. Orthologous to human CSNK2B (casein kinase 2 beta).

NR:

description
PREDICTED: casein kinase II subunit beta isoform X1

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0031519 PcG protein complex cellular_component
GO:0005956 protein kinase CK2 complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0019887 protein kinase regulator activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K03115 CSNK2B; casein kinase II subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006289 True 417 mRNA 0.59 4 1660638 1661843

Neighbor

gene id symbol gene type direction distance location
AMCG00006288 NA coding upstream 13508 1638059 ~ 1647130 (+)
AMCG00006286 NA coding upstream 85820 1573128 ~ 1574818 (+)
AMCG00006287 NA coding upstream 114788 1536907 ~ 1545850 (+)
AMCG00006281 NA coding upstream 226772 1424407 ~ 1433866 (+)
AMCG00006282 NA coding upstream 245475 1360610 ~ 1415163 (+)
AMCG00006293 NA coding downstream 53640 1715483 ~ 1721110 (+)
AMCG00006295 NA coding downstream 67966 1729809 ~ 1734311 (+)
AMCG00006296 NA coding downstream 81199 1743042 ~ 1752407 (+)
AMCG00006297 NA coding downstream 90926 1752769 ~ 1753029 (+)
AMCG00006302 NA coding downstream 102531 1764374 ~ 1793915 (+)
G108632 NA non-coding upstream 9179 1651055 ~ 1651459 (+)
G108587 NA non-coding upstream 105973 1352818 ~ 1554665 (+)
G108605 NA non-coding upstream 164930 1494364 ~ 1495708 (+)
G108602 NA non-coding upstream 172768 1487312 ~ 1487870 (+)
G108595 NA non-coding upstream 185671 1473372 ~ 1474967 (+)
G108831 NA non-coding downstream 227684 1889527 ~ 1890035 (+)
G108832 NA non-coding downstream 229193 1891036 ~ 1892425 (+)
G108833 NA non-coding downstream 231020 1892863 ~ 1893487 (+)
G108847 NA non-coding downstream 290371 1952214 ~ 1953042 (+)
G108854 NA non-coding downstream 329772 1991615 ~ 2011808 (+)
G108585 NA other upstream 230651 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 345080 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 374586 1278460 ~ 1286052 (+)
AMCG00006256 NA other upstream 656767 985873 ~ 1003871 (+)
AMCG00006246 slc39a7,LOC107395789,LOC106588393 other upstream 804918 846561 ~ 855720 (+)
AMCG00006294 NA other downstream 74089 1735932 ~ 1741336 (+)
AMCG00006366 NA other downstream 1581094 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 1612939 3274782 ~ 3286179 (+)
G109309 NA other downstream 1699511 3361354 ~ 3365565 (+)
G109362 NA other downstream 1841338 3503181 ~ 3506679 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_10215898_10219704 CK2B, BRAFLDRAFT_59924, CSNK2B coding CI01000054 null 10215898 ~ 10219934 (+)