AMCG00006292


Basic Information

Item Value
gene id AMCG00006292
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1344516 ~ 1637731 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006292
atGATGCTGCTCTCTCTGCTGTGTCTTCTGGCCGGCGGTCCTGGACTGGGCGTGGAAGgtTTAAGCCTCTACTCCAGTCAAGGTGGTGAAGTGACAGTGTCTTGTGAGGGACTGAGAAAATATGAGAATGATTCCATTGCATGGAGCTATAGCCATGGAATAGGGCCACCCATTGAACTCAGCAGAGGCATGAACATCACAGCCACCGATCCAGGAAGAGCTGGGAGGCTGAGAGTGCTGTCTGACAACTCTCTGCACATAGACGGACTCGGCCCACGGGACATTGGACGGTACACCTGTCAACAGTTAATCAACGGGAGACTCAACAGATCGGGATCTCCGGGAGGTATAGCGGGGGATGTGGACGAGCAGGTGGATCCCGGTGTGGGAGATGGTGGCGCAGAGGGCGGAGGCGGAGCAGGAGAAGGTGACAGTGCAGGTGACTGGGAGCTGCGGGAGGACATGGAGGGACCGCAGCCTGAGCTGCTCTTTAAGAGACCGCAGAGATTGAAAAGGACACGGAAGGCTGAGGTCGGGGCGGCGGTAAAAAAGCGCAGCATGGGGTCGCTCCGGGGGGAGCAGTACTGCCGAGCAGCGCTGAGGGGGCCGAGGGAAGTGCCATCGAGGAGCTGTGTGGCTCTGACACTCTCCACTCCCCATGTGTCTCTCAGTGGGAAGGCGGTCCAGCGTCACATCTTTGATGGTCCTGGCGAAGACTCGCATGCCCTGGTGGTTCAGGTGGACATCGTCGTGCAGGAGCTAGGTGCCGATGCTGGGGTGCTGGGCCAGGCGCACACGTGGGacgctgctgcagctgctgctgatCCTGTAGTTGGTTTCCTGAATCAGGCTGTGCTCGCTGCCCTGGATCAGCACTATCCCGGTGTTGTACAGGTATCTCTGAATGCTTTCTTCTCCGGCGCGCTCCTCAGCCCCTCCGGGTACGCGATCTCACGGCTACCCGCTGCTGTCTGCATCCTTAGTGTTCCAGACGAGGTGTACTCCACAGTTGGGGGGCTCCTGCTCCTGCCCTGTGTGGATCCTGTCAGTCTGGGACGAGGAGAGACACTGCGGTGGACCTACAGACAACCTGCTTCCAGCGCTCCAGTCACCCTGTATGGGTTAACATCCCAGTCTGAAACACCTCTGGCAGGGAAGGGGGTAGAGAATCAAAGAGCGGTGATGTTGGCCAACTCCTCACTGCTGATACACAGCGTGCAGACAGGGGACGCTGGGCTGTACCGCTGTGAGGAGAATAAGACTCAGGAGATGTTGGCTGTGAACATATTGTCAGTGAGCTCAGAGCAGACTGGAGAAGTGCAGAAGGGCAATGGCTCTGCTGTGACCCTGGCCTGCTCCCTCACCTGTGGGTCTGGATGTGTTGAAGACACTGAACTGATCTGGAAGAACAGTACAGGACACAGCCTGCAGGGCAGCGCCAGCGAGTGCAACAAGAGCACCATCTGCTCCCAGCTGGTCCTTCAGCCCCAGAGCTCTGAGAGGATCCGGtgcagtgtggagagagaggggctggaGAGAGTGAGCCAGGACTGGACCATAAAGATAGAGGCTGGACCAGGGACTGCAGTGGAGCTGGCGGTGAGACTGACTGTGTTCTTCATCGGCCTGATCGCCCCTCTGGTTGCTGGAGCCGTGGTTTACACCaagaggaggagcagcagacagacagACTGTTACCAAGAGCGGCTGACACAGGTGCTCATTTACACAGCTGCGGCCTCACTGGAGAAATCTGAGGCTTTGTGTGATCTGAGACCAGACCCCTACTGA
>TU136064
CCTCACCTGTGGGTCTGGATGTGTTGAAGACACTGAACTGATCTGGAAGAACAGTACAGGACACAGCCTGCAGGGCAGCGCCAGCGAGTGCAACAAGAGCACCATCTGCTCCCAGCTGGTCCTTCAGCCCCAGAGCTCTGAGAGGATCCGGtgcagtgtggagagagaggggctggaGAGAGTGAGCCAGGACTGGACCATAAAGATAGAGGCTGGACCAGGGGGCAAGTTTCCGATGGTGGAGGTGGTATCTGCAGCTGCTGCCTTCTGTGTGCTTCTGCTCCTCGTCTTCATCATCTTTCtggtgatgaagatgaagaaaacgaagaaggagggaaaaaaggATAGAGTCCCTTCTGATCAAGCCGAGGAGAGGCCTGAGTCAGTTTATCACAGCCCTGAAGAAATCATGagcTGTGCTGCCCCTCCCCACACAGATGATGTCAACTATACCAGTGTAATGTTCAAGTCCAAGAAAAGGGGACCTGAGAGAGAACAGACCTTCCTCCCCAATAGTGACGATGTCATTTACTCTGCTGTCACAACCACCCAGTAGATTGGGGGAGTGCAATGAAATGAGCCAGCCAGCAGGGGTCACTGTGCTCCAGCTGCTACAGAGACACACTCCCGCTAGAGACCATCAGGGAGGATGCAATGACAGAAATACAAAGATGCactgaaagacacagagagtgagagagacgtGCACTTTTtttacaggcacacacacacatatacatgtacagctctggaaaaaattgagagaccacttaacattgatttctgaacttggagtggtctcttaattattcCAGAGCTACATTTATAGACAgagggagaaacagagagagaggaattgcttttatactttcttttttaatgctgcatatttaaaattatcttatattattataaacaggCTGGCCAGTTACAAAACttctgaaatatattgttttagtctgtgcactttaaaaacaaagtctATTTTTCCTCAGGTCATAATGAATATCCTATTTTGAGACTTGTTTTTCTAGGCATTAACAGCCATTGCTGAAGAAATGTAAATCAGATCTTGTACCCCAATACTGCTGTTTAAAAGCCTATATCTACAGTGCTGACCAGCAATGCAAAGCTGTGTTCTTCAGATCAGATCTTTTGGGGACAGAGGGCTTCTCATACCGATTCCACCTTCAGCTgataattagttaatttaaataattattcacaGAACTAAACCAATGGAAGGGAAACTCTCTGTTAGGTCCTCAATGTGGGTAATTACATTGTCTTAATTAGATaaacctgctggactggagCCCTCTGTGACTGGATTAGAATCACTACTGTGATGAAAACACTTCTTGGCTTCTAgaatctgaatttgaattgatgGAAAAACCTGTCTTCAGTCTGTTTTCtatgtttctattttctttaataaatctGTATTATATTGCACTTTGGACTAAATGTGTTCTTAAAGTTGTGTggagcatttttttaataacactaACCGCTCAATGTCCAGTGTCTGTATTAACTTGGGTATTATATGTTATTGTCACCTTTTCACAATAGAGAAATCGAAGAAACGCTTGAAAAGGTCTCTTGcagttggagagagagagagagagagagaga
>TU136067
ATTTGTCTTGCGCTTTGTCATTTATAGATAGAGTCCCTTCTGATCAAGCCGAGGAGAGGCCTGAGTCAGTTTATCACAGCCCTGAAGAAATCATGGTAAAGCAGCACAGTGGTTTCTGTCTGATTGTGTCTGATTATAACTGGAGGCTTCTCTGAAACCTCCTCTCTCTATCAATGCAGTTACAAAGTTCAGCCACTCGGTTTGTCTGTAGGAaccccgctctctctctgtctactGTCCTATTGTGTGAATGGTACTCAGGGATTCTCTCATCTCATATGTCAATATGtgcatttctgtctgtctctgtaattataatacattgagCATACGTTCCTGCTTAGGCTCTATGCACAGCTATAGTGTGGAAAGGGTTAGTGTTGCGCAGCCGAGTGGCACTGTCCCGCAGACAGTCACAAAAAACAGGGAAGGACTCAGGGTTCAAGCTATTTCCTATGGCAGTGTTGTGTGCAGAGCAATAATAACAGAGCCATGATCCTTAGTTTACTTGATGaggattaaaaatgttttcacaaaaaaaatacatatgcagCAGAGTAATTCAAAACAGGGGAAACAGTCACGAACCTCAGAACACAAAGTGTTGTGATTGatattataaacaaaactaaatagaGTGTATAGTGTAAAAACCCATAAGTGCAAAAtggtctcttaattattcCAGAGCTACATTTATAGACAgagggagaaacagagagagaggaattgcttttatactttcttttttaatgctgcatatttaaaattatcttatattattataaacaggCTGGCCAGTTACAAAACttctgaaatatattgttttagtctgtgcactttaaaaacaaagtctATTTTTCCTCAGGTCATAATGAATATCCTATTTTGAGACTTGTTTTTCTAGGCATTAACAGCCATTGCTGAAGAAATGTAAATCAGATCTTGTACCCCAATACTGCTGTTTAAAAGCCTATATCTACAGTGCTGACCAGCAATGCAAAGCTGTGTTCTTCAGATCAGATCTTTTGGGGACAGAGGGCTTCTCATACCGATTCCACCTTCAGCTgataattagttaatttaaataattattcacaGAACTAAACCAATGGAAGGGAAACTCTCTGTTAGGTCCTCAATGTGGGTAATTACATTGTCTTAATTAGATaaacctgctggactggagCCCTCTGTGACTGGATTAGAATCACTACTGTGATGAAAACACTTCTTGGCTTCTAgaatctgaatttgaattgatgGAAAAACCTGTCTTCAGTCTGTTTTCtatgtttctattttctttaataaatctGTATTATATTGCACTTTGGACTAAATGTGTTCTTAAAGTTGTGTggagcatttttttaataacactaACCGCTCAATGTCCAGTGTCTGTATTAACTTGGGTATTATATGTTATTGTCACCTTTTCACAATAGAGAAATCGAAGAAACGCTTGAAAAGGTCTCTTGcagttggagagagagagagagagagagaga

Function

GO: NA

KEGG:

id description
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006292 True 1791 mRNA 0.58 11 1600137 1637731
TU136064 False 1641 TUCP 0.43 4 1344516 1623374
TU136067 False 1514 lncRNA 0.38 2 1344516 1346841

Neighbor

gene id symbol gene type direction distance location
AMCG00006278 nelfe coding downstream 43873 1298837 ~ 1300643 (-)
AMCG00006280 NA coding downstream 46546 1293396 ~ 1297970 (-)
AMCG00006273 NA coding downstream 82937 1248142 ~ 1261579 (-)
AMCG00006272 NA coding downstream 144522 1193270 ~ 1199994 (-)
AMCG00006271 NA coding downstream 153435 1181710 ~ 1191081 (-)
AMCG00006290 NA coding upstream 40531 1678262 ~ 1683356 (-)
AMCG00006299 NA coding upstream 55512 1693243 ~ 1709505 (-)
AMCG00006304 rps5,LOC106570065 coding upstream 170925 1808656 ~ 1818368 (-)
AMCG00006305 NA coding upstream 228828 1866559 ~ 1870731 (-)
AMCG00006307 NA coding upstream 292903 1930634 ~ 1932402 (-)
G108752 NA non-coding downstream 12472 1328802 ~ 1332044 (-)
G108750 NA non-coding downstream 23303 1320698 ~ 1321213 (-)
G108682 NA non-coding downstream 37636 1292038 ~ 1306880 (-)
G108717 NA non-coding downstream 142835 1180582 ~ 1201681 (-)
G108705 NA non-coding downstream 224818 1109651 ~ 1119698 (-)
G108790 NA non-coding upstream 24022 1661753 ~ 1663033 (-)
G108791 NA non-coding upstream 27217 1664948 ~ 1670631 (-)
G108789 NA non-coding upstream 81898 1719629 ~ 1721131 (-)
G108805 NA non-coding upstream 96464 1734195 ~ 1783566 (-)
G108834 NA non-coding upstream 248234 1885965 ~ 1886276 (-)
AMCG00006277 prrt1,LOC108272790,LOC107694357 other downstream 2851 1337187 ~ 1341665 (-)
AMCG00006274 zbtb12,LOC106570057,LOC106588515 other downstream 128332 1211286 ~ 1216184 (-)
AMCG00006266 NA other downstream 206564 1134901 ~ 1137952 (-)
G108708 NA other downstream 209826 1126562 ~ 1134690 (-)
AMCG00006247 NA other downstream 470022 838855 ~ 874494 (-)
G108784 NA other upstream 8749 1646480 ~ 1660004 (-)
AMCG00006298 NA other upstream 84830 1722561 ~ 1724848 (-)
G108829 NA other upstream 243551 1881282 ~ 1881837 (-)
AMCG00006313 NA other upstream 382270 2020001 ~ 2024143 (-)
G108938 NA other upstream 460087 2097818 ~ 2130255 (-)

Expression


Co-expression Network