AMCG00006298


Basic Information

Item Value
gene id AMCG00006298
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1722561 ~ 1724848 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006298
TTCCCTCAGAAATGCCCCCCAGGACAGCGCTGCCTTTCCAGCAAAGCCATTGGAACCAGAGGGGATTTCCGCGTGGTCTTCTATGAGAAGAGCTGTGTGGTGGCGGAGCTGTGCGGCGCCACGGGGGAGAAGCAAGCCATGGGCCTCAACTTCACCTTCACCAACACCTGCTGCGACGAGGACCTGTGCAACGCTGCCGCCCCCCGCTGGCCGCCCCCCGCCCCCGCGCTCGGCCTGGCGCTCGCCCTGACCCTCGCTGCCCAGGGCCTGTAG
>TU136131
ACTAGACTTTACTATTACTGTACACTGTGCACAGTTGTACTGCACTATAGTGTATTGTGCTATATTGTGCTGCCctatacactgtactgtactgtattgtgcttTACTGTGTACTGGGCATCTATCTCTGGGGTTTtcaacattgttattattgattgGTTGAATGATTTGTTAGTGGGATTTCCCGCAAATAACAGAGAAAATCTACAATATAAACTGTACTGCCATCCTCTCCCTCATTATCTCATTAACCAGTTAAGTTAATTGAAGGGAGATGGACAGGGTCAGTGTGCTGCAGAGGacagacactacacacacagtcagagtGAGTGAtaagagtgagagagggggagatacagacagtgtgagagagagaaaaacagaaccaCTGCAGATCGAGAGAGAAGAATAGAGGGGAGAGACtagaaataaagagagagagactattcTGGAGAGAGGTgtagactgactgactgactggacacgaCAGTACCTTAACACTGTGCTgccagagagggagaaagggagagaggacCGACAGACTAAGACGGGGAGAAGACcacaagagaagaaaaaggagaaataaaaagtgTGGATCAGCGGAAAAAgcagaaaagacagaaagaagagGAGCTAAAGGGACAGTGCATGAAAGACAAGACTAAAGATACTCAAAGagtgaaaaaagagagaaagacccCCAGTCCAATGTCTCACTTTGGGTTGTTGCTCCTCACCCTCTCTCTGCTGTACTCAGGTGggCAGTGCCTGCGGTGTTACACCTGTGTTTTCCCGGCTATCTCTCCTCTGGACTGCATCAAGTTCCCTCAGAAATGCCCCCCAGGACAGCGCTGCCTTTCCAGCAAAGCCATTGGAACCAGAGGGGATTTCCGCGTGGTCTTCTATGAGAAGAGCTGTGTGGTGGCGGAGCTGTGCGGCGCCACGGGGGAGAAGCAAGCCATGGGCCTCAACTTCACCTTCACCAACACCTGCTGCGACGAGGACCTGTGCAACGCTGCCGCCCCCCGCTGGCCGCCCCCCGCCCCCGCGCTCGGCCTGGCGCTCGCCCTGACCCTCGCTGCCCAGGGCCTGTAGAGCGGCCCGCCGGGTCACAGAGAGCGCCGGGGGGGCTGAATGCTGAGTCTTTATCCTGTgatactgtactgttactactgACTGCTATTGTAACATGACAACTATACTGTATTGTTAATATTGACCGCTATTGTAACAAGACAATCACTGTAGCCATTGACACTGTATGACATCTATATTTGATACTGTGTCTGTTTTACCCTATAGCTTTGCAGAAGTttgtaacattaaaattatagtttttttaaagataaccCTTCCTGTACTACAAAAGCTTGTCTCGGTT

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04727 GABAergic synapse
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006298 False 273 mRNA 0.67 2 1722847 1723402
TU136131 True 1381 TUCP 0.48 3 1722561 1724848

Neighbor

gene id symbol gene type direction distance location
AMCG00006299 NA coding downstream 13056 1693243 ~ 1709505 (-)
AMCG00006290 NA coding downstream 39205 1678262 ~ 1683356 (-)
AMCG00006291 NA coding downstream 123104 1595672 ~ 1599457 (-)
AMCG00006283 NA coding downstream 167007 1550443 ~ 1555554 (-)
AMCG00006285 NA coding downstream 224507 1494360 ~ 1498054 (-)
AMCG00006304 rps5,LOC106570065 coding upstream 83808 1808656 ~ 1818368 (-)
AMCG00006305 NA coding upstream 141711 1866559 ~ 1870731 (-)
AMCG00006307 NA coding upstream 205786 1930634 ~ 1932402 (-)
AMCG00006314 NA coding upstream 266454 1991302 ~ 1999290 (-)
AMCG00006315 NA coding upstream 286514 2011362 ~ 2016934 (-)
G108789 NA non-coding downstream 1430 1719629 ~ 1721131 (-)
G108791 NA non-coding downstream 51930 1664948 ~ 1670631 (-)
G108790 NA non-coding downstream 59528 1661753 ~ 1663033 (-)
G108770 NA non-coding downstream 162171 1504198 ~ 1560390 (-)
G108772 NA non-coding downstream 180200 1536944 ~ 1542361 (-)
G108805 NA non-coding upstream 9347 1734195 ~ 1783566 (-)
G108834 NA non-coding upstream 161117 1885965 ~ 1886276 (-)
G108948 NA non-coding upstream 328143 2052991 ~ 2057622 (-)
G109090 NA non-coding upstream 621674 2346522 ~ 2390552 (-)
G109091 LOC103376870 non-coding upstream 625906 2350754 ~ 2356238 (-)
G108784 NA other downstream 62557 1646480 ~ 1660004 (-)
AMCG00006292 NA other downstream 84830 1344516 ~ 1637731 (-)
G108755 NA other downstream 167897 1350485 ~ 1554664 (-)
AMCG00006279 NA other downstream 212021 1358397 ~ 1510540 (-)
AMCG00006284 prrc2a other downstream 228591 1473478 ~ 1493970 (-)
G108829 NA other upstream 156434 1881282 ~ 1881837 (-)
AMCG00006313 NA other upstream 295153 2020001 ~ 2024143 (-)
G108938 NA other upstream 372970 2097818 ~ 2130255 (-)
AMCG00006328 NA other upstream 599283 2324131 ~ 2329991 (-)
AMCG00006344 NA other upstream 856489 2581337 ~ 2586846 (-)

Expression


Co-expression Network