AMCG00006299


Basic Information

Item Value
gene id AMCG00006299
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1693243 ~ 1709505 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006299
GCTGCTGAGGAAACTGCTCACATTGTGGTCCTGCTTGGCGCTGGTGACCACCACCCTGGGAGAGACCACCTGTAGCACTGAGAggatgggggagagagggagagggaaagggagagaaagagggggagacagaCGGTGTCTCGAGAGGAGGAGAGTGGGAGTGGAGCTGGAGGAGAGCAGTGTGGGGATCTTCAAGTCTGAGCTGCACCCATCTGTGTACAAGCTGGCGTCGGGGGAGAAGGAAGGGCTCAGTCTCTCCCCACGCAACGGAGAGGTGCTGAGCACACTGCGGGACTCCCTGAGGAACATCAAGAACATCCCGacagtgtacagtgcagtgtgtatcaGGGACACGATTGGGTTCCTGCTCTCTGTTCCTCGGCTGCCCTATATGGTTGAGAAGGAGGACTTCCAGATGGAGGGGCTGGACTTCATGTTCCTGTCGGAGGACCGGCTGCACTATCGCTCTGATCGTACCAAGGAGCTGGACGCCATGCTGGGAGACCTGCACTGTGACATCAAGGACCTGGAGACGGCGGTGATGACAGCTCTGCAGTGTAAGGTGCTGGAGAGATCGCCGTGCCTCTACCAGGCCCTGGAATACTGCGCCCAGCTGGACTGTCTGATTGCCATGGCCATGGCTGCCCGGGAGCACGGCTACTGTCGGCCCGCGCTGAGCTCTGAGCCCCGAATACGCATCAAAGAGGGCCGACACCCGCTGGTGGAGCTGTGTACGGGGGTGTTTGTGTCGAACCCCACGCTCAGCTCAGAGACGGAGGGCAAAGTGGGGCTGATTGTGTTCATGGCTCTGATTGGCTCCAGTGTCCCGGCGGCGGAGGCGGAGATCGGGTTGATCGACGGCATCTACACCCGCATGCAGAGCCGagagtctgtgtctgtgggcCTGTCCACGTTCATCATTGACCTCAACCAGGTCTGGACTGGAATGGGCTGCCTTTGTACTTCAGCACACTGTCTTTACTGTGACGCACTGTCCAGACTGCAGtgcgatCGCTGCCCCCACCTGCTCCTCTCCACCAACTTCATCAGCCTCCTGAAGCTGGGGCTGCTCCCCCCCTCGCCCCTGCTCTCCTGCCTGACTCTGGAGACAGTGGTCGATGGGGAGGAGTTGGTGTTTTTCTACCAGCTGAAGGAGGGGCGCGTGTCCGGCGGAGGGCAGCACCTCCTCGGTCATGTACCGCTGCAGATCCACCGAGGGGTCGTCCAGGTCCAGCCTGAGGAACTGCTCCACCACAGCCcgacacctgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggagctggTGGAGATAAAAGAGCTGGTGCTGGCCAAGCTCACCACCTCCAACACCACAGAGCAGCTGACAGACCAGCTCAACAGAGTCCAACACAAGCACAAGGTCACAGTGAGGGAGctgagggaggaggtgagggagctGCAGCAGGACAGGGAGGCCATGAGGAGGGAGCTGACGGCCCTGAGAGAGGAACTGCAATGCAGAGACAAGACAGTGCAGAGCCTGAGGGAGCAGCTATACAAACTCACTGCCCACAACAACCAGCCCTCAAGAAACCCAGCAGTGCACACTCCCGGACACCGCAGACCCCAGCCTGGATACGCCCGACCACAGGACAGCAGACCCAGAGTGGAGCCCATCCAGAACATGCACAAAGCAGTGCAGCAGCACAGCCAGCGCAACTACGCAGCAGTAATCAGCAGAGTGGCCGACACCGACACCGGGGAGCTACAGGAGATCCGACACCTCCTCAACCTCATCCGGACCCGACTGATGAGA

Function

GO: NA

KEGG:

id description
K08741 MSH5; DNA mismatch repair protein MSH5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006299 True 1846 mRNA 0.60 14 1693243 1709505

Neighbor

gene id symbol gene type direction distance location
AMCG00006290 NA coding downstream 9887 1678262 ~ 1683356 (-)
AMCG00006291 NA coding downstream 93786 1595672 ~ 1599457 (-)
AMCG00006283 NA coding downstream 137689 1550443 ~ 1555554 (-)
AMCG00006285 NA coding downstream 195189 1494360 ~ 1498054 (-)
AMCG00006278 nelfe coding downstream 392600 1298837 ~ 1300643 (-)
AMCG00006304 rps5,LOC106570065 coding upstream 99151 1808656 ~ 1818368 (-)
AMCG00006305 NA coding upstream 157054 1866559 ~ 1870731 (-)
AMCG00006307 NA coding upstream 221129 1930634 ~ 1932402 (-)
AMCG00006314 NA coding upstream 281797 1991302 ~ 1999290 (-)
AMCG00006315 NA coding upstream 301857 2011362 ~ 2016934 (-)
G108791 NA non-coding downstream 22612 1664948 ~ 1670631 (-)
G108790 NA non-coding downstream 30210 1661753 ~ 1663033 (-)
G108770 NA non-coding downstream 132853 1504198 ~ 1560390 (-)
G108772 NA non-coding downstream 150882 1536944 ~ 1542361 (-)
G108760 NA non-coding downstream 283496 1405393 ~ 1409747 (-)
G108789 NA non-coding upstream 10124 1719629 ~ 1721131 (-)
G108805 NA non-coding upstream 24690 1734195 ~ 1783566 (-)
G108834 NA non-coding upstream 176460 1885965 ~ 1886276 (-)
G108948 NA non-coding upstream 343486 2052991 ~ 2057622 (-)
G109090 NA non-coding upstream 637017 2346522 ~ 2390552 (-)
G108784 NA other downstream 33239 1646480 ~ 1660004 (-)
AMCG00006292 NA other downstream 55512 1344516 ~ 1637731 (-)
AMCG00006298 NA other upstream 13056 1722561 ~ 1724848 (-)
G108829 NA other upstream 171777 1881282 ~ 1881837 (-)
AMCG00006313 NA other upstream 310496 2020001 ~ 2024143 (-)
G108938 NA other upstream 388313 2097818 ~ 2130255 (-)
AMCG00006328 NA other upstream 614626 2324131 ~ 2329991 (-)

Expression


Co-expression Network