AMCG00006304 (rps5,LOC106570065)


Basic Information

Item Value
gene id AMCG00006304
gene name rps5,LOC106570065
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 1808656 ~ 1818368 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006304
ATGGGGGGAACCAATGAGGACAGTAACCGGAAGCCGCGGGGGCCGCCGGGAGCATATCGTCGCCGCCCCGCCTCGCCGCGGCCCTTTTTCCTGCTGGAGAAGCGTGGAGACACAACGTGGATCCGAGAAGCGAATAGGATGACTGAGTGGGAGACCGCCCCAGCTGTGGCTGAGACCCCAGAGATCAAGCTCTTCGGGAAGTGGAGCACCGACGATGTCCAGATCAACGACATCTCCCTgcagGACTACATCGCAGTGAAGGAGAAGTATGCGAAGTACCTCCCTCACTCCGGGGGGCGCTACGCCGCCAAGCGCTTCCGCAAGGCGCAGTGCCCCATCGTGGAGCGGCTCACCAACTCCATGATGATGCACGGCCGCAACAACGGCAAGAAGCTCATGACCGTGCGCATCGTCAAGCACGCCTTCGAGATCATCCACCTGCTGACCGGGGAGAACCCCCTGCAGGTGCTGGTGAACGCCATCATTAACAGCGGCCCCCGGGAGGACTCCACCCGTATCGGCCGCGCCGGCACCGTGAGGAGACAGGCTGTGGACGTCTCGCCCCTGCGCAGGGTCAACCAGGCGATCTGGCTGCTCTGCACTGGTGCTAGAGAGGCGGCCTTCAGGAACATCAAGACCATCGCAGAGTGTCTGGCTGACGAGCTCATCAACGCTGCCAAGggcTCCTCTAACTCCTACGCCATCAAGAAGAAGGACGAGCTGGAGAGAGTGGCCAAGTCCAACCGTTAAGGTGCTGGGTGGCCGGCGGAGCTCTCCTGTCTGTTGTGTTCAGAGTAATAAACTGTTTCAGAAAAAACA

Function

symbol description
rps5 Predicted to enable mRNA binding activity and rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly and translation. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in ribosome. Orthologous to human RPS5 (ribosomal protein S5).

NR:

description
PREDICTED: 40S ribosomal protein S5 isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02989 RP-S5e, RPS5; small subunit ribosomal protein S5e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006304 True 819 mRNA 0.61 8 1808656 1818368

Neighbor

gene id symbol gene type direction distance location
AMCG00006299 NA coding downstream 99151 1693243 ~ 1709505 (-)
AMCG00006290 NA coding downstream 125300 1678262 ~ 1683356 (-)
AMCG00006291 NA coding downstream 209199 1595672 ~ 1599457 (-)
AMCG00006283 NA coding downstream 253102 1550443 ~ 1555554 (-)
AMCG00006285 NA coding downstream 310602 1494360 ~ 1498054 (-)
AMCG00006305 NA coding upstream 48191 1866559 ~ 1870731 (-)
AMCG00006307 NA coding upstream 112266 1930634 ~ 1932402 (-)
AMCG00006314 NA coding upstream 172934 1991302 ~ 1999290 (-)
AMCG00006315 NA coding upstream 192994 2011362 ~ 2016934 (-)
AMCG00006316 NA coding upstream 208768 2027136 ~ 2034235 (-)
G108805 NA non-coding downstream 25090 1734195 ~ 1783566 (-)
G108789 NA non-coding downstream 87525 1719629 ~ 1721131 (-)
G108791 NA non-coding downstream 138025 1664948 ~ 1670631 (-)
G108790 NA non-coding downstream 145623 1661753 ~ 1663033 (-)
G108770 NA non-coding downstream 248266 1504198 ~ 1560390 (-)
G108834 NA non-coding upstream 67597 1885965 ~ 1886276 (-)
G108948 NA non-coding upstream 234623 2052991 ~ 2057622 (-)
G109090 NA non-coding upstream 528154 2346522 ~ 2390552 (-)
G109091 LOC103376870 non-coding upstream 532386 2350754 ~ 2356238 (-)
G109099 NA non-coding upstream 576381 2394749 ~ 2397990 (-)
AMCG00006298 NA other downstream 83808 1722561 ~ 1724848 (-)
G108784 NA other downstream 148652 1646480 ~ 1660004 (-)
AMCG00006292 NA other downstream 170925 1344516 ~ 1637731 (-)
G108829 NA other upstream 62914 1881282 ~ 1881837 (-)
AMCG00006313 NA other upstream 201633 2020001 ~ 2024143 (-)
G108938 NA other upstream 279450 2097818 ~ 2130255 (-)
AMCG00006328 NA other upstream 505763 2324131 ~ 2329991 (-)
AMCG00006344 NA other upstream 762969 2581337 ~ 2586846 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009463 rps5 coding NC_007126.7 CM002899.2 39964943 ~ 39971756 (-)