AMCG00006309


Basic Information

Item Value
gene id AMCG00006309
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2042016 ~ 2045884 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006309
GTAACCGACAAGCGCGACGTCACTGCAGCGGCCCCGCCCACCCGGAAGAGCCGgccggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacaatagAGCCTACAGTCCCCGCAATGGCCGCTGTCACGCCGCGCAGCCTGGGCCTCGGCGCCCTCACGCTGCTCAACTTCGTGTTCGTGTTCGGCACCGGCGTGGAGTTCGTCCGCTTCGTGTCCTTCCGGGCGATATATCACAACCTGAGTGGACCGGGCGGGGCCCCGCAGTGTCGAGacTCAGTGGGCTGGGCGGAGGCCCTGCGGCGGCGCTCGGTGCTGAGCAGTATGTGTGTGGACGGGGGTCTGATCCTGCTGTTTGCCCTGCAGCACAGCGCCCTCGCCTGGCCGCCCCTCAAACGCCTCTGCCAGGCCGGGCTGGGCGTACTGCACCGGGGCTTCTACACTTTCACCACCGCGCTCACCCTGCAggtcCTGATGCGGTGCTGGCAGCCAGTGAGCGGCGCCCCCTGCCTGTGGTCGGTGAGCGGTGCACCATGGGACACCTGGCTGCCGCTGCTGTGCTTCATTCTGCACTTCCTGTGCTGGATGGTCATCTGCAGCATCCTGCTCATCTTTGACTACGCTGAGCTGCTGGGCATCAAGCAGgtttaCTACCACTGCCTGGGCCTGGGCGACCCCCTGTCCATGAAGTCGCCCCGGGCGCAGCGCCTGTTCTCGCACCTGCGCCACCCCGTGTTCGTGGAGCTGTGCGTGGTGCTGTGGGCACTGCCCTGCCTGCCACTGGACCGGCTGCTGCTGGCCGTGGGGCTGACCACCTACCTGGCGCTGGGCCACTCCCTGGACACGCAGGACTGCGCATACCTGCACGCCCAGCTGCGCAGCAAACTGCAGCTGTTCAGCCAGCCAGTCATGGGGGAGGGTGGGGCCAGCAGCACCAATCACAAGACAGACTGAGGCTCAGGctgagaggggtggggggaggtgtgtgtgtgtctttctttctatgattctgtgtgtgtccctctctttctttctgtgtgtctttgtgtctgagtgtgtctctctctgtctgtgtggccGTGGGTCTCTggatgtgtctctctctgtgtctgtgggtctctggatgtgtgtttctctcttcttcctcctctatctgtgtttctctgtctcttcctcttccccacccaccctctctctctgctcaggGCTCAGTGTGCAGTATTGCAGTCAGTTGACCCGGCTCTAGCGCTGTGGGGAGACTGAGTGGCTGAGCACTGGAAcatgtccagtccagtccagtctgaGAATGTGTGTTTTCAGAGGGACAGCTGAAAAGCAGCTCAGCTGTGACACGAGGGCCGGGCAGAGCTGGCAGAAGTAGCACGACAGCTTCTACAGAATGCTACGAGCTTGCATCAACTCCTGCTTATAGTTTATACTGTTGAAATGTTAcggttttctgcttttttattttattttctccaagtTCGGTATCTTTGAGGCGCACATGGTGATACATTTGGGATTTTTCTCGGCTTTGGGGGATTTCCCATTGCGGTTGATATcctgaaaatgttgtattggAATGTATAGTGTTCCTCCGGTTATCTCTCTCGCTATCTGTCAAACACACTGTCTCCTGTCTGttacaggacaggacaggacagagagagagagagaggaatggatAGAGCCAGTTAGACACTTAGAGGGAGGGTCAGAAAGTGATAGAGAAGAGATAGACataagacacagagagagggatatacatggagagagagtgagaagagagagatgtacagataaagagggagagaggcagaggagtGGGGAACACAGCAGACAAGGTGTATTACAAGCTGGCTTATTAGAAATGGCTGCAGAAGTGTTACAGAAATCATGAGAAATAAGacttctatatttatatattttttaagagcCAAAAAGGCAGTTTTGTTATCTGTCCGTCTCAGACTGTTATGTTTTGGATGCTGTTTGAAAGCTTCAGTTCATTGTTTTATACTGAAAACTGTATTAGGGACAAGCCAGGCAACAGTGTTgaatactgtacaatgcaataaACTGATTctgtttgtaatataaaataacaaaca

Function

GO:

id name namespace
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006309 True 2119 mRNA 0.55 4 2042016 2045884

Neighbor

gene id symbol gene type direction distance location
AMCG00006308 NA coding upstream 133930 1896505 ~ 1908086 (+)
AMCG00006303 NA coding upstream 154446 1883754 ~ 1887570 (+)
AMCG00006301 NA coding upstream 161936 1877557 ~ 1880080 (+)
AMCG00006306 NA coding upstream 176710 1860979 ~ 1865306 (+)
AMCG00006300 NA coding upstream 235976 1805301 ~ 1806040 (+)
AMCG00006311 NA coding downstream 14315 2060199 ~ 2068535 (+)
AMCG00006312 ppt2,LOC107086175,LOC101072178 coding downstream 22866 2068750 ~ 2073323 (+)
AMCG00006310 NA coding downstream 34648 2080532 ~ 2089002 (+)
AMCG00006317 NA coding downstream 88472 2134356 ~ 2137701 (+)
AMCG00006318 NA coding downstream 108513 2154397 ~ 2171374 (+)
G108856 NA non-coding upstream 8444 2008087 ~ 2033572 (+)
G108854 NA non-coding upstream 30208 1991615 ~ 2011808 (+)
G108847 NA non-coding upstream 88974 1952214 ~ 1953042 (+)
G108833 NA non-coding upstream 148529 1892863 ~ 1893487 (+)
G108832 NA non-coding upstream 149591 1891036 ~ 1892425 (+)
G108878 NA non-coding downstream 52465 2098349 ~ 2128000 (+)
G108884 NA non-coding downstream 82434 2128318 ~ 2130263 (+)
G108890 NA non-coding downstream 114093 2159977 ~ 2252346 (+)
G108889 NA non-coding downstream 204683 2250567 ~ 2289455 (+)
G108914 NA non-coding downstream 214058 2259942 ~ 2262497 (+)
G108626 rps5,LOC107086176 other upstream 227406 1637397 ~ 1814610 (+)
AMCG00006294 NA other upstream 300680 1735932 ~ 1741336 (+)
G108585 NA other upstream 612029 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 726458 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 755964 1278460 ~ 1286052 (+)
AMCG00006366 NA other downstream 1197053 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 1228898 3274782 ~ 3286179 (+)
G109309 NA other downstream 1315470 3361354 ~ 3365565 (+)
G109362 NA other downstream 1457297 3503181 ~ 3506679 (+)
AMCG00006379 NA other downstream 1524155 3570039 ~ 3621796 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013728 nrm coding NC_007130.7 CM002903.2 816208 ~ 822275 (+)