AMCG00006316


Basic Information

Item Value
gene id AMCG00006316
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2027136 ~ 2034235 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006316
ATGCGCGCTGTGCTGTGCGCTGGAGTCTGTGATCCCGGAGCGTCGAGCGGTCGGATCCACATCGAGAGGCGAGCGCAGTCAGCCCACCGCGTTGCGGGCGATGAGGGGATAGAAACCCgcggacagagagagggagaaggagaaactgagggagagacggagaaaACTGTCCCCCGGAAGGAGGTGGTGGAACGGCCCATCAGAGCAAGGGAGCGAGAGGCGATCGAGATGGATAGAAAGAACCGCACCTACACCCTGCTGgaggagagcgagagcgagGAGGAGACTGAGCAAGCCACAGGGAAGACTAGAGGAGGAGCAGGGAGGGACAGGGGCAAGGAGAAGGGGAAGAAGAGGAAAAACCTGCGACAGAAACGAGAGGAGAGCTCTTCGTCTGGAGAGGAGGACAAGAGtAAGAAGGCAGCCACGGGTTTGACGGGGAagggcgaggaggaggaggaggagtgggagaaggaggagagggagcGGCTACAGGACCTGGAGGAGAGGGACGCGTTCGCTGAGAGAGTGAAGCGGAGAGACAAAGACAAGACCCGGCACATACTGGAGAGAAATGACAAGAAGgcaTATGAAGAGGCCCAGAAGAGACTGAAGATGGCCGAGGAGGATCAGAAGAAAATGCTGCCAGAGCTCCGTAAGCAGTCCCGGCGGCAGTACCTGTCCCGGCGCGAGCAGGAGaagctgcaggagctggagcaggagatCGCGGATGAGGAGCTGCTGTTCCAGGACCAGCCGTTGACCCGGCGTGAGCGCGAGGAGCTGCAGTACAAGCGCACTGTGCGGGATCTGGCCCAGGACTACAAGAAGGCCGGCGAGAGGGAGCGTGAGGAGAGGAGCAACCGCTACTACATGCCCGAGGAGAAGAGGACCAAGaccGTGCCGGAGCGAGCTGAGGTGGAGGAGAGGGACAGTGAGCGAGCAGGAGGGGAGGGCACGTGGAGCGGCGGGGGGGAGCAGGGCCGCTGGGaggaggagaggctgggggCGGCCTCCCTGCACTTTGGAGCGAAGGATGCCCGGGAGCGCGGCATGGAGGAGGAGCGGGAGAAGTACCAGCTGGTGTTGGAGGACGAGGAGATGATCAACTTCGTCAGCGCCAGCCTGGCGGAGGTGCGGCGCAGTCTGCCTGTGTTCCCCTACAGGGAGGACCTGCTGGCGGCCATCGCGGAGCACCAGATCCTCATCATCGAGGGCGAGACAGGCTCCGGCAAGACCACACAGATACCCCAGTACCTGCTGGAGGAGggCTACACAGAAGGGGGGAAGAAGGTTGGCTGCACCCAGCCCCGCAGAGTGGCGGCCATGAGTGTGGCGGCCAGGGTGGCCCAGGAAGTGGGCGTCAAGCTGGGCAATGAGgtggGGTACAGTATCAGGTTTGAGGACTGCACCTCTGAGCGCACTGTGCTGAAGTACATGACAGATGGCATGTTACTGAGAGAGTTCCTCACCGAGCCAGACCTGGCCAGCTACAgtgtggtgatcaTAGACGAGGCCCACGAGCGCACCCTGCACACGGATGTGCTGTTCGGCCTGATCAAGGACATCGCCCGCTTCCGGCCCGACCTGAAGGTCCTGATCGCCAGTGCCACCCTGGACACCGAGCGCTTCTCCACCTTCTTCGACAACGCACCCGTGTTCAGGGTGCCGGGCCGCCGCTTCCCAGTTGACATCTTCTACACCAAGGCCCCGGAGGCGGACTACCTGGACGCCTGTGTGGTGTCCGTGCTGCAGATCCATGTCACCCAGGCCCCCGGGGACATCCTGGTGTTCCTCACGGGACAGGAGGAGATCGAGGCTTGCTGTGAGATGCTGCAGGACCGGTGCCGGCGCTTGGGCTCCCGCATCGCCGAGCTCATCGTGGTTGTGGCGACAAATATCGCAGAGACGTCCCTGACGATCGACGGCATAATCTATGTGATCGACCCCGGCTTCTGCAAACAGAAGAGCTACAACGCCAGGACGGGCATGGAGTCCCTCATCGTCACGCCCTGCTCCCGGgcGTCAGCGAATCAGCGCGCGGGGCGGGCAGGGCGAGTGGCAGCGGGGAAGTGCTTCCGTCTGTACACTGCCTGGGCCTTCAAGCATGAGATGGAGGAGACGACCGTGCCCGAGATCCAGAGGACCAACCTGGGCAACGTGGTGCTGCTGCTCAAGAGCCTGGgtaTCAATGACCTGATCCACTTTGACTTCATGGACCCCCCACCCCACGAGACGCTGGTGCTGGCCTTGGAGCAGCTGTACGCACTGGGGGCTCTGAACCACCGGGGGGAACTGACTAAGTTGGGCCGCAGGATGGCTGAGCTGCCAGTTGACCCCATGCTGTCAAAGATGATCCTGGCGTCCGAGCAACAACGCTCGCATGAACTTCATCGTGCCGGGCGGAGACCACCTGGTGCTGCTCAATGTCTacacacaggttgggtGGAGAGCGGTTACTCCACTCAGTGGTGTTATGAGAACTTCATCCAGTTCCGCTCGATGAAGAGGGCGCGAGACGTGCGGGAGCAGCTCGAGGGGCTGATGGAGAGGATCGAGGTGGAGCTGAGCAGCTGCCAGGGAGACGCCACCCCCATACGCAAGGCGGTGACGGCCGGCTACTTCTACCACACGTCCCGCCTCAGTAAGTCGGGGTACCGCACCGTGAAGCACCAACAGACCGCCAAAGAGCTGGAGGACTCGTCCAGCAAGAAGATGCCGCGCATTCAGGGCAAGACCCGAGAGGAGCTGGGCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006316 True 2757 mRNA 0.62 20 2027136 2034235

Neighbor

gene id symbol gene type direction distance location
AMCG00006315 NA coding downstream 10202 2011362 ~ 2016934 (-)
AMCG00006314 NA coding downstream 27846 1991302 ~ 1999290 (-)
AMCG00006307 NA coding downstream 94734 1930634 ~ 1932402 (-)
AMCG00006305 NA coding downstream 156405 1866559 ~ 1870731 (-)
AMCG00006304 rps5,LOC106570065 coding downstream 208768 1808656 ~ 1818368 (-)
AMCG00006320 NA coding upstream 63338 2097573 ~ 2099149 (-)
AMCG00006322 NA coding upstream 64932 2099167 ~ 2102889 (-)
AMCG00006321 NA coding upstream 90137 2124372 ~ 2128938 (-)
AMCG00006319 NA coding upstream 102589 2136824 ~ 2140157 (-)
AMCG00006325 NA coding upstream 172372 2206607 ~ 2208884 (-)
G108834 NA non-coding downstream 140860 1885965 ~ 1886276 (-)
G108805 NA non-coding downstream 243570 1734195 ~ 1783566 (-)
G108789 NA non-coding downstream 306005 1719629 ~ 1721131 (-)
G108791 NA non-coding downstream 356505 1664948 ~ 1670631 (-)
G108790 NA non-coding downstream 364103 1661753 ~ 1663033 (-)
G108948 NA non-coding upstream 18756 2052991 ~ 2057622 (-)
G109090 NA non-coding upstream 312287 2346522 ~ 2390552 (-)
G109091 LOC103376870 non-coding upstream 316519 2350754 ~ 2356238 (-)
G109099 NA non-coding upstream 360514 2394749 ~ 2397990 (-)
G109163 NA non-coding upstream 784234 2818469 ~ 2832329 (-)
AMCG00006313 NA other downstream 2993 2020001 ~ 2024143 (-)
G108829 NA other downstream 145299 1881282 ~ 1881837 (-)
AMCG00006298 NA other downstream 302288 1722561 ~ 1724848 (-)
G108784 NA other downstream 367132 1646480 ~ 1660004 (-)
AMCG00006279 NA other downstream 516596 1358397 ~ 1510540 (-)
G108938 NA other upstream 63583 2097818 ~ 2130255 (-)
AMCG00006328 NA other upstream 289896 2324131 ~ 2329991 (-)
AMCG00006344 NA other upstream 547102 2581337 ~ 2586846 (-)
AMCG00006354 NA other upstream 854251 2888486 ~ 2894534 (-)
AMCG00006390 NA other upstream 1664650 3698885 ~ 3728519 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009396 dhx16 coding NC_007126.7 CM002899.2 34899645 ~ 34934784 (-)