AMCG00006336 (ppp1r10)


Basic Information

Item Value
gene id AMCG00006336
gene name ppp1r10
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2641412 ~ 2649109 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006336
ATGGGTTTTGACATCCAGGGTTGTGTGTATTATGTGGTTCCCCAGGCACTGTTGACGATGGCGGTGGGACCAGTGGACCCCCGTGAGCTGCTGAAGGGAGTGGAGTCTCTCCTGGGGAAAGAGGGGGACATCCGCAACCCTGAGGGCGTGGCCAAGATCTTCAGTTTAATGAAGAACAGTCAGAAGATGGTCAGCAGGTGTATGTATCTGAACATCGTGCTGCAGACCAAATCACAAGACATCCTCAACAGGTTCATCAGGGTCGGAGGCTACAAGCTGCTCAACGCCTGGCTGACCTACTGCAAGAGCACCAACAATACCCCGCTGATGCAGCTCATCCTGCTCACCCTGCAGAAACTGCCCCTCACTGTGGACCACCTCAAACAGAACAATACGGCTAAGCTGGTCAAGCAGCTGAGCAAGAGTGGCGACACAGAGGatAAGAAGCGTAAGAAGGATGAGATGAAGGGGAAGGCAAGTGAGGCGAAGGGGGGAGATGGAGGAAAGCctttggaggaggagaagaagaaagagaagccCAAAGCTCCCCGCACCACCGCCCCCAGCCACGCCAAATTCAGATCCACAGGTCTGGAGTTGgacacccccacccctctcccgGCCAAGAAACCCCCAGTCCCCCCCCAGCTGGGTGACAAGTACAACATCAAGCCAGCGGTGCTGAAGAGACAGAGttCGTCGGGCCCTCCGGACGCTCCTCCCGTGGAGAAGAAGTACAAGCCCTTGAACACCACGCCTAACTCCACCAAGGAGATCAAAGTCAAAATCATTCCTGCACAACCGATGGAGTGCACAGGCTTCCTGGATGCCCTGAACTCGGCGCCATCCCTGGACGCCCCCACCAGCACCAAGCCCTCGTCCCCGGAGCCGGCTGCCCCCCAGCAGGCCTCCCCCTCACAAGACCCCCCCGAGCTGGAGCAGCCGGGCACCCCGGTACCCACGGAGGAGGGGGTGGAGCCCATGGACACAGcagagAAGCCCAACGCACTGTCTGAGCCCCGGGGGGAGGAGGAGCCCCAGCTGACAAAGAAaggcaagaagaagaagagtGACTTCGGCGAGGCGGCCAAGCGGGAGATGATGATGGACAGGCAGGCGTTCGAGACGGCGCGGCGCCTGTCCCACGATGCCATGGAGGAGAAGGTGCCCTGGACGCCCCCCCGGCCCCTGCTGCTGCCCTCCAGCCTGGTCCTCCCGGGTAGCTCCAGcctggagagacacacacagctggagCGGGAGAAGGGCATCCTCCAGGAGATCTTCCTGTCCAAGGAGAGTGTTCCTGACAGCCCTCACGAACCCGACCCCGAGGCCTACGAACCTGTGCCCCCCCGGCTCATCCCACTGGACGAGGGCCCTGGCGCCAAGCTGCCCCCCGTCCTGGCCAACCTGATGGGCAGCCTGGGCAGCGGCCGCAGCCCCCAGCCCCAGGGCACGCCCCCCGTCAACGtgcaggagctgctgtccaCCATCATGGGGGGACAGGGAAACCAGGCCCCCGAGGACCTGATCAAGCAGCCTGATTTCTCCGACAAGATCAAGCAGCTCCTGGGCTCCCTGCAGCAGAGCCAGCCGCCCCCCCAGCCTCCACCGCCCGGGCCCCCCCCAGTGAGCTCAGGGTTACTGGGTCATGGTCCTGGCATGAACGGCGGCTTCCCTCCCCCCAAGGGCGGCCCCCACTACCCCCCCCACGGCCACTGCCCCCCCGGCGGACACTTCCCAGGGCCCCATGgcgggggaggaggaggaggaggagggggcggcGGACCCCCAGGAGGACCCCGGATGATGGGGCCCCCGCCACCTCACCCGCAGACCCGGGGGGGCGACGGCGGGTACTGGGAGCAGCACGGAGACCCCATGAGGGGCGGCCCCCACGGCATGCGGGgcggaggaggcggaggaggggggggaggcGGACACTTCCACAGGGGCCGAGGGGGCCGCGGCGGGGGGGACCCCAACTTCCGAGGACGGCCGGGCAGAGGGGGGCCGGGAGGCGGGCCCCTGAGAGGAGGCGGAGGGGGCCCCAACGGGCCGCACATGGGAGacatgTCCAATCGGCCGGTGTGTCGACACTTCATGATGAAGGGCAGTTGTCGCTATGAGAACAATTGTGCGTTTTACCACCCCGGGGTGAACGGCCCGCCCCTGCCCTAACTACCCTTCTCCCCTTTGACTGGCACTCAGACTCTGCCCCGCCAGCGCCGAGGTGGGCTGGACTCACCCAGCCGCACGCTGTGGGATGAGGGAATTATGGGgaacaggatttgtttttttgttttgttttttcctactGGGATCGATGAGAAAGACTTTGAGGAAGTTTGGATCGAttccctttctccctccttctctcggGGACCCAGACCCCCCCGGCTGACCCGGCCCATCCTCCAGCCTCTCCTGCTGTACTGGAAACACTGGAGTCTCTGCAAAGGATTTCCCCACTATCCATCACATGAGGACGGAAAGAAAGAcgatacatgtttttttactttattatttaaggactttatttttttttatatcgaTACCTCCATCTCTGGGCTTAGCTTGAAACGGagaactctctctccctcttcctctctctctctctctctctctctctccctctctctccaatgCAGAATCACAATTCTGGTCTCCCAAGTTTGAGTAGGTTTTTATTGGCATAACAGTGGAATATTGATATTTTGTGGGCCAAAGCActtaaaacagacaaacttcTATTCCTGCTGTACAcagaaactctctctctctctctctctctctctctctctctctctctctccatccccctACTCCTACTCCTGCACAGGGGCTAGACTACTAATGACTTTGTGCAAGAATACAGAACCAATCAGAAGTATTGTAAGCTCAATAATGCACACAGCATGCATGCAGAGTcacagtgtgtgggtgtgtgtgtgggtgtgagagaGCAGTGaaaaagtaatagtaatattagGAATTATATTGATCAGTTACTAGAGGGTGCTAGTTTATCATACTGtttcatcaatattttaaattggttCTTTCTTGGTAGTGATAATCATAGTGAAAGCAATGACATGGTGCTACTCTCAGAGATTGTTCCatcaaaattataattgttatatctattaataattattaggAATGGCTACTTCCAGATGTTTCATTATTGTTATAACTTAGAATTAATAATTTGTCCATCTCAGTTATtgttagtaatagtagtatgaATTAGTGGGTGCTACTTTCCAATACTGATTcatccaaaataatatttaaattagaagTGCTGCTGTCAGCCCCTCGCTGTGACTCTCAGTACTGTGTGCCTGGATGTGTGGCTGAGTGATCTCTCAcatgcttacacacacacacacaatctctctctcaattaCAGCAGCTCTCTCTGTGTAAATAGTTTGTACATTTCAAACCAAAAAAGTGTTGGAGCTTATTCTTATGATTTACAGTTTGAGTTGCTACTGTGAATATTCCTGATTGTATGATACACTATGACCACTAaagaagtttattttattttacttttgggGGGNNNNNNNNNNTATCAAGT

Function

symbol description
ppp1r10 Predicted to enable metal ion binding activity and protein phosphatase inhibitor activity. Predicted to be located in nucleus. Orthologous to human PPP1R10 (protein phosphatase 1 regulatory subunit 10).

NR:

description
Protein phosphatase 1, regulatory subunit 10

GO: NA

KEGG:

id description
K17552 PPP1R10; protein phosphatase 1 regulatory subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006336 True 3592 mRNA 0.56 17 2641412 2649109

Neighbor

gene id symbol gene type direction distance location
AMCG00006335 abcf1,LOC107745711,LOC107687077 coding upstream 15779 2613092 ~ 2625633 (+)
AMCG00006338 NA coding upstream 35928 2599254 ~ 2605484 (+)
AMCG00006337 NA coding upstream 47335 2589384 ~ 2594077 (+)
AMCG00006334 NA coding upstream 101572 2528231 ~ 2539840 (+)
AMCG00006330 NA coding upstream 245048 2391719 ~ 2396364 (+)
AMCG00006339 NA coding downstream 15704 2664813 ~ 2668215 (+)
AMCG00006345 NA coding downstream 80928 2730037 ~ 2751105 (+)
AMCG00006349 NA coding downstream 146137 2795246 ~ 2801973 (+)
AMCG00006350 NA coding downstream 152961 2802070 ~ 2807457 (+)
AMCG00006351 NA coding downstream 160231 2809340 ~ 2811305 (+)
G109011 LOC100846954 non-coding upstream 122878 2436058 ~ 2518534 (+)
G109010 NA non-coding upstream 238261 2402903 ~ 2403151 (+)
G109004 LOC103376870 non-coding upstream 285174 2350754 ~ 2356238 (+)
G108987 NA non-coding upstream 348516 2292697 ~ 2292896 (+)
G108914 NA non-coding upstream 378915 2259942 ~ 2262497 (+)
G109217 NA non-coding downstream 355747 3004856 ~ 3028646 (+)
G109218 NA non-coding downstream 367670 3016779 ~ 3069228 (+)
G109260 NA non-coding downstream 585796 3234905 ~ 3236401 (+)
G109301 LOC103376870 non-coding downstream 690980 3340089 ~ 3393931 (+)
G109389 NA non-coding downstream 899505 3548614 ~ 3548988 (+)
G108626 rps5,LOC107086176 other upstream 826802 1637397 ~ 1814610 (+)
AMCG00006294 NA other upstream 900076 1735932 ~ 1741336 (+)
G108585 NA other upstream 1211425 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 1325854 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 1355360 1278460 ~ 1286052 (+)
AMCG00006366 NA other downstream 593828 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 625673 3274782 ~ 3286179 (+)
G109309 NA other downstream 712245 3361354 ~ 3365565 (+)
G109362 NA other downstream 854072 3503181 ~ 3506679 (+)
AMCG00006379 NA other downstream 920930 3570039 ~ 3621796 (+)

Expression


Co-expression Network