AMCG00006344


Basic Information

Item Value
gene id AMCG00006344
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2581337 ~ 2586846 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006344
ATGGCTGGCGCACAAACTTTCCCTTTTGAAATTAACTACGGAACTCCAGCAGGGATGGCGTTAATCCCCGCAGCAGCCGCCGACTCCGGCCGCAGAGCTTCAGCGCTCGCTCccgaggagagagaggaagacaagAGGAGTGAGAACGACGAgcgagaggagaggaggggaggggaggagagccAGCAGAAGAGCCGGCCCGCTGCCGTGGAA
>TU136566
GGCGGGCAGCTCAGTCTCTTGCAGTTTGTTCTTCATGAGAGAGCTCCAGCAGGGATGGCGTTAATCCCCGCAGCAGCCGCCGACTCCGGCCGCAGAGCTTCAGACCCTGTTGCACTGGGAGGCTGATGTCTTGAGCACCAGGACAAGGACTCGATGGCCGATTTGAGGGTCCGCTGCTGAGCTCTGATTGGCTGTAGCTGTGGTGACCACAATGGCAGGAGAGGAGCGGAGCTGCTAAAGcGTTTGGGAACAGGTCTGTGCAGATGAGGAACCTGGCAGAATGATCCCTGCATGGCTTCAGTAGCCAAGAACTCCGACTGACTCTGTGTCCCAGCTCCTGTTCTGGAGTGACTGTCCAGGGACTGACCTGGCCTTACTGAGTGAGAAGTGCTTTGGAAGTGGGAAGACTAACTGGAaactgatgtatttttaataaaaacttaatTGAACATGTCTTGT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006344 False 213 mRNA 0.62 3 2581337 2586846
TU136566 True 459 lncRNA 0.54 6 2582619 2585989

Neighbor

gene id symbol gene type direction distance location
AMCG00006340 NA coding downstream 1681 2575661 ~ 2579656 (-)
AMCG00006333 NA coding downstream 19902 2558875 ~ 2561435 (-)
AMCG00006332 NA coding downstream 31157 2540270 ~ 2550180 (-)
AMCG00006331 NA coding downstream 167376 2403555 ~ 2413961 (-)
AMCG00006329 NA coding downstream 280813 2278147 ~ 2300524 (-)
AMCG00006342 NA coding upstream 19376 2606222 ~ 2609426 (-)
AMCG00006343 NA coding upstream 41649 2628495 ~ 2631707 (-)
AMCG00006341 NA coding upstream 63782 2650628 ~ 2659502 (-)
AMCG00006357 NA coding upstream 377469 2964315 ~ 2964962 (-)
AMCG00006355 NA coding upstream 378972 2965818 ~ 2970452 (-)
G109099 NA non-coding downstream 183347 2394749 ~ 2397990 (-)
G109090 NA non-coding downstream 190785 2346522 ~ 2390552 (-)
G109091 LOC103376870 non-coding downstream 225099 2350754 ~ 2356238 (-)
G108948 NA non-coding downstream 523715 2052991 ~ 2057622 (-)
G108834 NA non-coding downstream 695061 1885965 ~ 1886276 (-)
G109163 NA non-coding upstream 231623 2818469 ~ 2832329 (-)
G109294 NA non-coding upstream 699424 3286270 ~ 3287229 (-)
G109322 LOC103376870 non-coding upstream 753272 3340118 ~ 3433270 (-)
G109334 NA non-coding upstream 780351 3367197 ~ 3369548 (-)
G109432 NA non-coding upstream 961768 3548614 ~ 3561944 (-)
AMCG00006328 NA other downstream 251346 2324131 ~ 2329991 (-)
G108938 NA other downstream 451082 2097818 ~ 2130255 (-)
AMCG00006313 NA other downstream 557194 2020001 ~ 2024143 (-)
G108829 NA other downstream 699500 1881282 ~ 1881837 (-)
AMCG00006298 NA other downstream 856489 1722561 ~ 1724848 (-)
AMCG00006354 NA other upstream 301640 2888486 ~ 2894534 (-)
AMCG00006390 NA other upstream 1112039 3698885 ~ 3728519 (-)
AMCG00006398 NA other upstream 1143196 3730042 ~ 3815517 (-)
AMCG00006414 NA other upstream 1565970 4152816 ~ 4158123 (-)
G109633 NA other upstream 1578088 4164934 ~ 4165600 (-)

Expression


Co-expression Network