AMCG00006345


Basic Information

Item Value
gene id AMCG00006345
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2730037 ~ 2751105 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006345
ggCTGATACAGTAGAAAGTAAGCGGACGGTGTTCAGTGTGCAGCAGAGTCTCTGCAGGTGAGCACACTGACTGGCTCACTTTGAAAAAGGGAGctGAACTCGGAAATCTTTGTACTGAATCGCAAAGCAGCAACCTGAAGAGAATGGCTCCTTATTGGGCTTTCCTCGTACTGGGTTTGTCTCTCCAGACAGCATGGGGTCGGTATCCCCTGTCACTGAAACCGATGCTGAtgctggggaaaaaagaaacattattgACATCAATAAAGGTTTAGATCTAATGGAAGGGGACATAATGGTCCGCAAGTTCAAAGACAGGAACTCCATCGTGGGCGATCAGTACAGGTGGCCACAACCTGTTCCCTACTACCTGAATGACAGCCTAGagatGAATGCCAAAGCActcattttaaaagccattgaGCAATTTCGGCTTAAGACTAGCATTGACTTCAAGCCCTGGGAGGGAGAACCCAACTACATTTCACTCTTTAAGGGCAGCGGATGTTGGTCTTACGTTGGGAATCAACGGACGGGAAAACAGGATCTTTCCATTGGACAGTACTGTGACACCATTGCCATTATTGAACATGAGTTGCTTCATGCTCTGGGGTTCTGGCATGAACATACCAGAGCTGACCGTGACGATTACGTCACTATCATGTGGGATCAGATTATGCCAGGTGAAGAGCACAACTTTGATAAGTACAGTAACAGTGATGCCCTGAATGTGTCGTATGACTTCACCTCCGTGATGCACTATGACAAGAATGCCTTTAGCACCGGAAATCTCCCAACCATCGTCACCAAGGATCCTCAGTTTACCAATGTCATCGGCCAGCGCTTGGACCTCAGTGAGCGGGACATTCTGAAACTCAACAAGCTCTACAACAGCAATTCCTCAGTGACATTTCTGGACCAGTGCAGTTTTGAGTCGGACAGTATCTGTGACATGATTCAAGGCACAGGGGACGATGCGGACTGGAAGTTTGTGACACAAGTCCCTGGAAAACTTTTGTCTGATCACACCTACCTGGGGTCAAAccGGCACTTCATGCACTTCAGCACAGCCACAGGCAGTGCCAGAGACAAGGCCTACCTGGAAAGCAAAACCTTTCAGCCCAAGAGAAGCTTCCACGGGAGTGCGGACGACCAGTTGAATGTCTGGATCAGAGAGTATGACTCGGCTCACCCTACTGGGACTCTGAGGCTCATGGGGAGGGTCACAGGTTCCCCGGGAGATTCCTGGCAGCTGCATCACATCCCCTTGAACGCAACCAAGCCGTTCCGAGTCGTCTTTGAGGGCAGAAAAGGAGCAGGAAGTTCAAGCGGTGGTCTCTCTATTGATGATGTCAACCTCTCTGAGACACAGTGCCCCGCCCACACCTGGCACATCAGAAACTTCACTCAGCTTTTAGAGACCACTAAACCTGGATCACAATTTTTTAGTCCACGATTCCAGTCTAATGAGGgatacacatttcagattagTGTGTATGTCAATGGTACAACAAGCTACCCAGGTAACCTGGCTGTATTCTTCCACCTCACCTCTGGGGAAAACGATGACCGACTGCAGTGGCCCTGTGCTTGGAGACAGGGGACAATGTTACTGATGGACCAAAACCCCGACATTCGCAAGCAGATGAGCAACCAGAGGAGTATCACGACTGACCCTGAGATGAGCACAATTACatTGAATGGCAGCTCCCGTCTGTTTTGGGATGACCCTCGCAAAGTTGGGAATCTTGTCACTGATGAAAACGGAACGTTGTTTTACCGAAGCCCTGGATATGGATACAATGTGTTTATCAGCCACGACCGACTAAGGAGCAGAGAGTTTATAAAGGGAGATGATGTCTTCTTCCTCCTGACCATGGAAGATGTTTCCCGCCTCCGATCTAGTCAGACACTTTGGACGACCACACAGCCCTCCACCATATTTGAACCAACCACAGAGCCCTCCACATTTGAACCAACCACACCAGACCTGTGCAATGTGTTTTGGTGCTGGTCTGGAAGTATCTTTGGCAGCTCCCCTGGGATGGCGGCCTCATCTCTGCTGCTCACTGTGTCCTTGCTGGCTTCGCTCCTGCAGTAGACTCACATCTAGGCACAGATGGCACACCCATTGTACCCCTACTGTACTGCAgtttcaccacacacacactcttactaTAAAGAGACTACTGTCACTACAGCCACCTACTGCAACATGGCTGTCGTcccatatgaaaaaaaaaaaatgcatctacAATTCATTTCACCAGAAGTATTCTATTGTACTTGAAGCATAACCCCTTACTATAACAAGTCTTTTCTATTGTACCTATACTAACAGCCTCCACTGTAACAATTATACCTTTACTATAACACCTCTATAACACCACAACTTTTCTCCTGTGCTGTTATTAAAGCCTCATATTGTAGCCAGACTATTGACCAAACTGTTTCTCCAGTTACCTCTTCATattatggtttaaaatgtaaagctgcTCTCTCCCTCAACGTCTCCTTGTCCTtgtttaaaacttatttttttattttttttaagtgaaagaACAGTAAAGCTTAAAATAGCTGAGTTGTAAATTGTGTAAAACATTTGGACATCATTATCCTACTTGAAACCTGGTGTCGTGCAGATGTACCTACAACCAACATAAAATGTGGCAGAGTCTCGGGGGGATAATAGTGTGGTACAGAGGGGAACTCAAAAACTTAATCTCCCCTGTTAAGAGAGGTCCTTCAAATTTAAAGAGAGGTCTTACAATCTGACCAGTAAATCGATCTCTGTGCAGTTTACATGCCAACATCTGACTCCCTCTACTATAAAGAGGATGGTTTCCATGACCTCCAAACTCAAATTGTCCACTTCCAAATCCTGGTCTTGGTTCTGCTCAGTGAAGATCTTAAAACCAGGACTGACTACATCAGCACAGAGGGCAACACCCACGTATTCGGAGACACCCCTCCATACCTCACACATGAGCAAACAAAGGAACGGCCACAATAGTGTGGTCAACAAGAGTGGGAAACAGGTACTGCATCTCTTTAAAGGGCTGGGTCACTATATTGTCAATGGCAGGAGCAGGGAGGACTCTCTGGGGAGATTCACCTACTCCTCGGCTCTACTGACGAATGCATGTTGACTATGCAATAATGGACATAGacccctaaaataaaaatgtattcatagtCAGGCAACAGACTCCCCTGTCAGACCACAGTCAGGTAAACCTATACTATGCCCTGAGAGAATACAAACACCTcctgagaaagaaaaagcacaacTATTTAACCAGAAAATTATATCAAATTGAAGATGCAATTGACCAAAACTCTTTTTgggaattgtttaaaaaatgtgaaaataaataaataaacgaattATCCATTCAAAATGCTAATATATGGAAACCCTTtagcaaaaaaaattaaataaagatttaaatttGGACCAGTGCCCATATTCATAAAGTGTCTGAGAGTGATAAATCAGTCCTAAGtgcctgaaatatctgagagtgaTGTCAATTTGGTCCTACATTTACTGTTAggagtaaaagctattcataaagattctttagaagtaaaagtactacTAACTCaaccaatatttaggagacctcacAAGGTCCCCTAACTAACTGGGTGTCATCAAGGattttgaatcacacattcagaatgtgtcgagatctcaGTATCCTAAGCAGTGTTTCCCAAGCACCAGTCTGCGGGACATTGCTACTCCTCAAATCCAcactaaataatacataaaaatcatAGGAACATAATTGAAAATGCTTCAAGTGTTCTGTATTGgtgttgtatttgttattgatATGTGGGTCACCTGAGGTGCCACAGGATCAGAATGACTAGAAGGGAGGGTAAAAGGGTTAATCTCATATTTTGATATCTTGCCAGTAGGGAAAAAGGTGGGTGTGGAGTCAATGAGTGAGTGACACCTGAATTGAGTCTGGCTAATTACTTTTGAGAGGCTCAAACTAAAAGGGATTAATTAACACAGCCTGTTAAGCAACATCAGGGCTAATATGACGTACACATGTGCGcatgttttatatgtgtatagGGTGTGTAGTGCAATATGTGTCACTGTACTAAAAAAGAAAGTGTGGCTAAAGTGAGGCCTCTTTCATCACAAATGGGCTGTGTTCTGGGTTCAGGGCGGCAACAGAATTTTTGTTTCActaattttctatttaaaatgcttaCTATGTTTTCACAAGTTTGGTTTCTACGGATACANNNNNNNNNCTAACTAACTAACTTCATTAGTGGAGATGAGCAACTGAATACAACATGTTGGTGATGACAGATCTATCTGAAAATATTCCTCAGGGCAAGAGAGCTACTGCTTACCTTTACTAATCTTTATAgcttttttgtgttgatttctgtgaataaatgattattgc

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
K08076 E3.4.24.21; astacin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006345 True 4442 mRNA 0.44 17 2730037 2751105

Neighbor

gene id symbol gene type direction distance location
AMCG00006339 NA coding upstream 61822 2664813 ~ 2668215 (+)
AMCG00006336 ppp1r10 coding upstream 80928 2641412 ~ 2649109 (+)
AMCG00006335 abcf1,LOC107745711,LOC107687077 coding upstream 104404 2613092 ~ 2625633 (+)
AMCG00006338 NA coding upstream 124553 2599254 ~ 2605484 (+)
AMCG00006337 NA coding upstream 135960 2589384 ~ 2594077 (+)
AMCG00006349 NA coding downstream 44141 2795246 ~ 2801973 (+)
AMCG00006350 NA coding downstream 50965 2802070 ~ 2807457 (+)
AMCG00006351 NA coding downstream 58235 2809340 ~ 2811305 (+)
AMCG00006348 NA coding downstream 61226 2812331 ~ 2813489 (+)
AMCG00006346 NA coding downstream 81400 2832505 ~ 2846173 (+)
G109011 LOC100846954 non-coding upstream 211503 2436058 ~ 2518534 (+)
G109010 NA non-coding upstream 326886 2402903 ~ 2403151 (+)
G109004 LOC103376870 non-coding upstream 373799 2350754 ~ 2356238 (+)
G108987 NA non-coding upstream 437141 2292697 ~ 2292896 (+)
G108914 NA non-coding upstream 467540 2259942 ~ 2262497 (+)
G109217 NA non-coding downstream 253751 3004856 ~ 3028646 (+)
G109218 NA non-coding downstream 265674 3016779 ~ 3069228 (+)
G109260 NA non-coding downstream 483800 3234905 ~ 3236401 (+)
G109301 LOC103376870 non-coding downstream 588984 3340089 ~ 3393931 (+)
G109389 NA non-coding downstream 797509 3548614 ~ 3548988 (+)
G108626 rps5,LOC107086176 other upstream 915427 1637397 ~ 1814610 (+)
AMCG00006294 NA other upstream 988701 1735932 ~ 1741336 (+)
G108585 NA other upstream 1300050 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 1414479 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 1443985 1278460 ~ 1286052 (+)
AMCG00006366 NA other downstream 491832 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 523677 3274782 ~ 3286179 (+)
G109309 NA other downstream 610249 3361354 ~ 3365565 (+)
G109362 NA other downstream 752076 3503181 ~ 3506679 (+)
AMCG00006379 NA other downstream 818934 3570039 ~ 3621796 (+)

Expression


Co-expression Network