AMCG00006346


Basic Information

Item Value
gene id AMCG00006346
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2832505 ~ 2846173 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006346
ATGCAAGACAGGAACTCCATCGTGGGCGATCAGTACAGGTGGCCCCAACCTGTTCCCTACTACCTGGATGACAGCCTAGAGATGAATGCCAAAGCACTCACTTTAAAAGCCATTGAGCAATTTCGTCTCAAGACCAGCATTGACTTCAAGCCCTGGGAGGGAGAACCCAACTACATTTCACTCTTTAAGGGCAGCGGATGTTGGTCTTACGTTGGGAATCAACGAACGGGAAAACAAGATCTTTCTATTGGACAGTACTGTGACTATTTTACCACCATAGAGCATGAGTTACTTCATGCTCTGGGGTTCTGGCATGAACATAGCAGAGCAGACCGTGACGACTACCTCACCATCATGTGGGATCAGATTATGCCAGGTCAAGAGGAGAACTTTGAAAAGCACAATGAAAGTGACGCCCTGAATGTGTCGTATGACTACACCTCCGTGATGCACTATGACAAGACTGCCTTCAGCAATGGAAGCTTGCCAACCATGATCGCCAAGGACCAAAAGTTCACTAACATCATGGGTCAGCACTTGGACCTCAGCGAGCAGGACATTCTGAAACTCAACAAGCTCTACAGAAGCAATTCCTCACTCACCTTTCTGGACCAGTGCAGTTTTGAGCCAGACAGAATCTGTGACATTATTCAAGGTGCAGGGGACAATGCGGACTGGCAGCTTGTGACACAAGCCCCTGGAGAACCTCTGTCTGATCACACCTACCTGGGGTCaaactgtatgtTCTCAGGGCACTTCATGCACTTCAGCACAGCCACAGGCAGTGCCGGAGACAAGGCCTACCTGGAAAGCAAAACCTTTCATCCCAAGAGAAGCTTCCAGTGCCTGCAGTTCTTCTCCTACCACAGCGGGAGTGCGGACGACCAGTTGAATGTCTGGATCAGAGAGTACGACATGACTCACCCTAATGGGTCTCTGAGGCTCATGGGGAGCATCACAGGATCCCCGGGAGATTGCTGGCAGCTGCATCACATCCACTTGAATGCAACCAAGCCATTCCGAGTCATCTTTGAGGGCAGAAAAGGAACAGGAAGTTCAAGTGGTGGTCTCTCCATTGATGATGTCAACCTCTCTGAGACACAGTGCCCTGCCCACACCTGGCACATCAGGAACTTCACTCAGCTTTTAGAGACCACTAAacccaaatacatttttagtccACGATTCCAATCCAGTGAGGGATACACATTTCAGATCAGTGTATCTGTCAATGGTACAAGCTTTCCAGGTTTCATGACTGTGTTCTTCCACCTCACCTCCGGGGAAAACGATGACCGACTGCAGTGGCCCTGTGCTTGGAGACAGGGGACAATGGTACTGATGGACCAAAACCCCGACATTCGCAAGCAGATGAGCAACCAGAGGAGTACCATGACTGACCCTGTTACACCTGCGCCGGATGGCAGCTCCCAGCTGTTCTGGGATGACCCTCGCAAAGTCGGGAGCCTTGTGACTGATGAAAATGGGACATCGTATTACAGAGGTCCTGGAGATGAGTTCTCTCTGTTTCTCAGCCACAACCGACTGAGGAGCAGAGAGTTCATGAAGGGAGATGATGTCTTCTTCCTCCTGACAATGGAAGATGCTTCCCACCTCCGATCTAGTCAGACACTTTCGATGAACACACAGCCCTCCACCACATTTGAAACGACCACACAGCACTCCACCAGCTCCCCTGGGATGGCGGCCTCCTCTCTGCTGTTCACTGTGGCCTTTCTGGCTGCACTCCTGCAGTAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
K08076 E3.4.24.21; astacin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006346 True 1758 mRNA 0.51 10 2832505 2846173

Neighbor

gene id symbol gene type direction distance location
AMCG00006348 NA coding upstream 19016 2812331 ~ 2813489 (+)
AMCG00006351 NA coding upstream 21200 2809340 ~ 2811305 (+)
AMCG00006350 NA coding upstream 25048 2802070 ~ 2807457 (+)
AMCG00006349 NA coding upstream 30532 2795246 ~ 2801973 (+)
AMCG00006345 NA coding upstream 81400 2730037 ~ 2751105 (+)
AMCG00006347 NA coding downstream 20130 2866303 ~ 2882217 (+)
AMCG00006358 NA coding downstream 61999 2908172 ~ 2934561 (+)
AMCG00006352 NA coding downstream 90770 2936943 ~ 2944472 (+)
AMCG00006353 NA coding downstream 109162 2955335 ~ 2960532 (+)
AMCG00006359 NA coding downstream 142970 2989143 ~ 3001290 (+)
G109011 LOC100846954 non-coding upstream 313971 2436058 ~ 2518534 (+)
G109010 NA non-coding upstream 429354 2402903 ~ 2403151 (+)
G109004 LOC103376870 non-coding upstream 476267 2350754 ~ 2356238 (+)
G108987 NA non-coding upstream 539609 2292697 ~ 2292896 (+)
G108914 NA non-coding upstream 570008 2259942 ~ 2262497 (+)
G109217 NA non-coding downstream 158683 3004856 ~ 3028646 (+)
G109218 NA non-coding downstream 170606 3016779 ~ 3069228 (+)
G109260 NA non-coding downstream 388732 3234905 ~ 3236401 (+)
G109301 LOC103376870 non-coding downstream 493916 3340089 ~ 3393931 (+)
G109389 NA non-coding downstream 702441 3548614 ~ 3548988 (+)
G108626 rps5,LOC107086176 other upstream 1017895 1637397 ~ 1814610 (+)
AMCG00006294 NA other upstream 1091169 1735932 ~ 1741336 (+)
G108585 NA other upstream 1402518 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 1516947 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 1546453 1278460 ~ 1286052 (+)
AMCG00006366 NA other downstream 396764 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 428609 3274782 ~ 3286179 (+)
G109309 NA other downstream 515181 3361354 ~ 3365565 (+)
G109362 NA other downstream 657008 3503181 ~ 3506679 (+)
AMCG00006379 NA other downstream 723866 3570039 ~ 3621796 (+)

Expression


Co-expression Network