AMCG00006352


Basic Information

Item Value
gene id AMCG00006352
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2936943 ~ 2944472 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006352
TGTGGCTCAGCCCCTGTCCTGCTGCACTCTCCCTCCATTAATTTGTCTGTGTCGCTGGATCCCTCCGTCCATCCGTCCGTCACTCCGAGACACAGAGCTGGACACTATGAGACTGCTGCTGGTTTGGTCAGTGCTGACTGGAGCTGCCTGGAAATACATAgctgGCGAAATAAGAACAGCAACAGCACATACAGGAGGGGAGGTCCACATCTCCTGCTCTGCTAAAGGACCAGAAATCACCTGGGACTGGGAGCCCAAATACCCCAAGTGTGCTGGAGTGAAGGGGAACTGGCAGCTGATCTACAGCATTGACAAAAGTGGAAACCATAGAGTGGAGTCAGGCAGGTTTAGGAACAGACTGACAGTGACTGGAGATCCTGAATTTATACTGGAGCTGAAGGACGCGGTCATGAGTGACGCTGGAGTGTACAGCTGTTATGATCGTGCAGGACATTGGGACTCTGTTCATCTGAGTGTGAATGCAGGCTGCTACAAGAATTTGAAAGTGACTCCATCTAACCAGTCAGTCAGCCCCAGAGTGGGAGAGTCTTTTAGTTTCATTTGCTCCCACTGTGACAGTACAGAGCCACCAGCAACTGGCTTTGACTGGAGCCTCAATGGACAGCCCATCAATAGAGGCTCTAGGGGATTTGTGATGGGGAAGAAGCATCTGACTATACAGAGAGTGGATGAGAGGCATGAGGGCAGAGTGACCTGTGGCTCAGGGGGTCAGAGGACAGAGCTGTGCCTGACAGTGGACAACACATCACTGGGATCCACTGCCACACCCCCACCTGGAGACCCCACACTGAGGCCCACCACTGAACAGCCAGGCAGAAGAGGACGAAGAGCAGTGTATCAGACCATAGATGAAGTGCAGTACACCGCAGTCAGTTTCACAGCAGCGGAAAGCCGCCCCCTCAGAGACCACCCGGCCACACAGGACTCCACAGTGTATTCGCCCATCATGACCAAATAGCACCATCGAGTGGCAGAATCACGAACTGAATTGTGAATCTGTTTAACCCCTTCCGTTCTggatgtttatattattattactgttgttgttatgaattatcataataatcattatgCCATCATCAACATCATTTAGTCTTAGTTGTTAGTTTTTCCAACATAAACTCTGCAGGTTCGTGCACAACTGAAATTCTGAACTAGGATCTCAAAGACTGTCTTTATAGATGCATAGTCTTCATGGATATCTTAGCCCCATCTTACTTAAAGAGAAACAGGAAGGATTACTGATTTTGCTCCTATCTTATCATCTACTTGAACGCAGAAGCTACATGTTGGGACTTGAACGCTGAACTCTGTGTTTCAAAAGCATCAGGGATAAAGttagtgctctctctctctctctctctctctctctctctctctctctctctctctcaggtattAAATGTATACCCCACGgtgatttgttagttttttatttgttttgtttttactgtaccGTAGCAGTTAATGACAACTGGAGTCTATGAGTGTTGTACTTATGAGCAAAGCgcatgatgtgtgtgtatatgactaattttttttttttacttgaatcTGAATTGAAGTTGAAGATCCATATACACACTGTATAGTGTACTGTAAAGACCACTGCACACGTGTTtagttaaatgtaattataaacaataatatgttaattgaatttgttatttctgttatgatgacattattattattattattattattattattattattattattattatt

Function

GO:

id name namespace
GO:0005539 glycosaminoglycan binding molecular_function
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006352 True 1752 mRNA 0.44 5 2936943 2944472

Neighbor

gene id symbol gene type direction distance location
AMCG00006358 NA coding upstream 2382 2908172 ~ 2934561 (+)
AMCG00006347 NA coding upstream 54726 2866303 ~ 2882217 (+)
AMCG00006346 NA coding upstream 90770 2832505 ~ 2846173 (+)
AMCG00006348 NA coding upstream 123454 2812331 ~ 2813489 (+)
AMCG00006351 NA coding upstream 125638 2809340 ~ 2811305 (+)
AMCG00006353 NA coding downstream 10863 2955335 ~ 2960532 (+)
AMCG00006359 NA coding downstream 44671 2989143 ~ 3001290 (+)
AMCG00006360 NA coding downstream 149610 3094082 ~ 3111575 (+)
AMCG00006364 NA coding downstream 206600 3151072 ~ 3177539 (+)
AMCG00006367 NA coding downstream 275747 3220219 ~ 3232977 (+)
G109011 LOC100846954 non-coding upstream 418409 2436058 ~ 2518534 (+)
G109010 NA non-coding upstream 533792 2402903 ~ 2403151 (+)
G109004 LOC103376870 non-coding upstream 580705 2350754 ~ 2356238 (+)
G108987 NA non-coding upstream 644047 2292697 ~ 2292896 (+)
G108914 NA non-coding upstream 674446 2259942 ~ 2262497 (+)
G109217 NA non-coding downstream 60384 3004856 ~ 3028646 (+)
G109218 NA non-coding downstream 72307 3016779 ~ 3069228 (+)
G109260 NA non-coding downstream 290433 3234905 ~ 3236401 (+)
G109301 LOC103376870 non-coding downstream 395617 3340089 ~ 3393931 (+)
G109389 NA non-coding downstream 604142 3548614 ~ 3548988 (+)
G108626 rps5,LOC107086176 other upstream 1122333 1637397 ~ 1814610 (+)
AMCG00006294 NA other upstream 1195607 1735932 ~ 1741336 (+)
G108585 NA other upstream 1506956 1350383 ~ 1429987 (+)
AMCG00006275 NA other upstream 1621385 1286829 ~ 1315558 (+)
AMCG00006276 NA other upstream 1650891 1278460 ~ 1286052 (+)
AMCG00006366 NA other downstream 298465 3242937 ~ 3252080 (+)
AMCG00006368 NA other downstream 330310 3274782 ~ 3286179 (+)
G109309 NA other downstream 416882 3361354 ~ 3365565 (+)
G109362 NA other downstream 558709 3503181 ~ 3506679 (+)
AMCG00006379 NA other downstream 625567 3570039 ~ 3621796 (+)

Expression


Co-expression Network