AMCG00006354


Basic Information

Item Value
gene id AMCG00006354
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2888486 ~ 2894534 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006354
ACAGCAGTTCACAGGAGAGGAGCTCCTGTAGTCAGTGTAACAGCAGTCTAGGGTAGGAGAGTGTAACAGCATAGTGTTAGTACAGATCAGGGGACAGCCAGGCTCCGACGCCATGAGAGGGTGCGGCTCTCACTCCATTCTCCTTCTCCTGCTGATGGCACCGGGCTGGGAGTCTAGAGACAAAATCTCAGTGGCAGTAGATGCAGATGCGGTGTATGTGGTTGTGCCTGTTGTTGTTGCACTGGGCTGTTTAGCGCTGCTGGGAGTCCTGTGGTGCAGAAAGAGGACCAGAGAAAGAGGACCCGAGGACCAGCCCGAGCCCTTCTACTCGGAGGTGAAGGACCACCCAGCCTCGCAGAGCAgaccCCAGGACCAGCCGGAGCCCTTTTACTCTGTGGTGCAGAAGCCCGTCGCTTCACAGCACAGACCCCAGGACCAGCCTGAGCCCTTTTACTCAGTGCTGAAGAAGCCCACAACCTCACAGCACAGACCCCAGGACCAGCCCGAGCCCTTTTACTCTGTGGTGCAGAAACCTGTGGCTTCACAGCACAAGACCTGTTGAAGAGGAAAGCAGAGATTATGacaatgaagagagagagatggacagagagagagagagagagagagagagatggaaggcTGTGTGCTGTAATAATGTTGTCGGTTTgggttgatttttgtttgtgtttgtagtttTGCATTgtaatctctccctctctcccatgcAGTGTGTGTTGATAATGGAGGGATTCTCTCTCATTACCACTCTCTCACCCCGTGTCTCCTGTTCTCTTGTTCATTACGTTGGATTTTGCTGTTCAGTTTTCTgttggaattttttttttataacaattgaaataaaaaataaataaaaatca
>TU136636
GTGGTATAGTGCGGTTCAGGGCAGCGttcattacagtacagtgcagtgtgttctCCAGACATCTTATGGCAGGTTGCTGTCTGTCCTGTTCCTGCAGATGCAGATGCGGTGTATGTGGTTGTGCCTGTTGTTGTTGCACTGGGCTGTTTAGCGCTGCTGGGAGTCCTGTGGTGCAGAAAGAGGACCAGAGAAAGAGCCAAAGGAAATGCATCTGCAGTCTACTTCCTGGCTCAGGCCCCTCAGACAGCTAAAAGAGGACCCGAGGACCAGCCCGAGCCCTTCTACTCGGAGGTGAAGGACCACCCAGCCTCGCAGAGCAGACCCCAGGACCAGCCTGAGCCCTTTTACTCAGTGCTGAAGAAGCCCACAACCTCACAGCACAGACCCCAGGACCAGCCCGAGCCCTTTTACTCTGTGGTGCAGAAACCTGTGGCTTCACAGCACAAGACCTGTTGAAGAGGAAAGCAGAGATTATGacaatgaagagagagagatggacagagagagagagagagagagagagagatggaaggcTGTGTGCTGTAATAATGTTGTCGGTTTgggttgatttttgtttgtgtttgtagtttTGCATTgtaatctctccctctctcccatgcAGTGTGTGTTGATAATGGAGGGATTCTCTCTCATTACCACTCTCTCACCCCGTGTCTCCTGTTCTCTTGTTCATTACGTTGGATTTTGCTGTTCAGTTTTCTgttggaattttttttttataacaattgaaataaaaaataaataaaaatcagtttattta
>TU136638
AGTGCGGTTGCAGACAGCAGTAACAGCAGTTCACAGGAGAGGAGCTCCTGTAGTCAGTGTAACAGCAGTCTAGGGTAGGAGAGTGTAACAGCATAGTGTTAGTACAGATCAGGGGACAGCCAGGCTCCGACGCCATGAGAGGGTGCGGCTCTCACTCCATTCTCCTTCTCCTGCTGATGGCACCGGGCTGGGAGTCTAGAGACAAAATCTCAGTGGCAGTAGACACCACCACAACCAGTTCCA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006354 True 878 mRNA 0.50 7 2888495 2894512
TU136636 False 781 lncRNA 0.48 6 2888486 2891893
TU136638 False 243 lncRNA 0.54 2 2892894 2894534

Neighbor

gene id symbol gene type direction distance location
AMCG00006341 NA coding downstream 228984 2650628 ~ 2659502 (-)
AMCG00006343 NA coding downstream 256779 2628495 ~ 2631707 (-)
AMCG00006342 NA coding downstream 279060 2606222 ~ 2609426 (-)
AMCG00006340 NA coding downstream 308830 2575661 ~ 2579656 (-)
AMCG00006333 NA coding downstream 327051 2558875 ~ 2561435 (-)
AMCG00006357 NA coding upstream 69781 2964315 ~ 2964962 (-)
AMCG00006355 NA coding upstream 71284 2965818 ~ 2970452 (-)
AMCG00006356 NA coding upstream 80163 2974697 ~ 2982807 (-)
AMCG00006361 NA coding upstream 218009 3112543 ~ 3117675 (-)
AMCG00006363 NA coding upstream 225743 3120277 ~ 3124200 (-)
G109163 NA non-coding downstream 56157 2818469 ~ 2832329 (-)
G109099 NA non-coding downstream 490496 2394749 ~ 2397990 (-)
G109090 NA non-coding downstream 497934 2346522 ~ 2390552 (-)
G109091 LOC103376870 non-coding downstream 532248 2350754 ~ 2356238 (-)
G108948 NA non-coding downstream 830864 2052991 ~ 2057622 (-)
G109294 NA non-coding upstream 391736 3286270 ~ 3287229 (-)
G109322 LOC103376870 non-coding upstream 445584 3340118 ~ 3433270 (-)
G109334 NA non-coding upstream 472663 3367197 ~ 3369548 (-)
G109432 NA non-coding upstream 654080 3548614 ~ 3561944 (-)
G109439 NA non-coding upstream 692062 3586596 ~ 3655123 (-)
AMCG00006344 NA other downstream 301640 2581337 ~ 2586846 (-)
AMCG00006328 NA other downstream 558495 2324131 ~ 2329991 (-)
G108938 NA other downstream 758231 2097818 ~ 2130255 (-)
AMCG00006313 NA other downstream 864343 2020001 ~ 2024143 (-)
G108829 NA other downstream 1006649 1881282 ~ 1881837 (-)
AMCG00006390 NA other upstream 804351 3698885 ~ 3728519 (-)
AMCG00006398 NA other upstream 835508 3730042 ~ 3815517 (-)
AMCG00006414 NA other upstream 1258282 4152816 ~ 4158123 (-)
G109633 NA other upstream 1270400 4164934 ~ 4165600 (-)
AMCG00006415 NA other upstream 1273516 4168050 ~ 4177052 (-)

Expression


Co-expression Network