AMCG00006371


Basic Information

Item Value
gene id AMCG00006371
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3356795 ~ 3361837 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006371
ATGTCCGCAGTTTCCGAGTACCCTGCCCTGTCTGCTTTCCGTGGAACACATGACCAGAGGAGCCATTGGTCGTGTGGTGGTGTATTTAATGCCCTCCTTCCCCAGGTGAACCCCCTGGTGTTTGATGAGCAGCTGCTGTGGGTGAGTGGGGGTGCAGGCTCTGTGAACACCTACCGCATCCCACTGGTCACCTTCACCCAGCGGGGCAGCCTGCTGGCCTTCTCTGAGGCCCGCAAGAGCTCCTCCAGCGACATTGGGGCCAAGTTCATCGCGGTGCGGCGCTCCACAGATGGGGGCTTGGTGTGGAGCCCCACCTCGTTCATCGTGGACGATGGCTCCCTGGCGGACGGCCTGAACCTGGGCTCGGTGGTGGTGGACGAGGAGACTGGTGTGGTGTTCCTGCTCTACTCGCTCTGCTTCCACCGTGCCCAGTGCGCCCAGCCCAGCACCATGCTCGTCTACAGCACCGATGACGGCCTGAGCTGGAGCCACCCGAGGAACCTGTCCTCTGAGCTGGGGGCCAAGGCCTTTGCCCCAGGGCCAGGCTATGGCATCCAGAAGCGCTTCCGTCCGGCTCGGGGCCGCCTCATCGTGTGCGGTCATGGGACCATCCAGGGCGACGGAGTGTTCTGTGTGCTGAGCGACGACCACGGCCGCACCTGGAGGAACGGCGCAGCACTCAAGAGCATCCCTTACAACCAGCCCAAGAAACCCGGCGACTTCAACCCAGATGAGTGCCAGCCAGTGGAGATGCCCGACGGTTCGGTGGTGATCAATGCCCGGAACCAGAACAGCTACCATTGCCGCTGCCGGCTGGTGGTGCGCAGCGACGACGGGTGCGAGACGCTGCCGCTGGACACGCTGCGATTCGACGAGACCCTCATCGACCCCGAGGTGGCGGCAGGGGCGCTGGTCAAGGAGGGGGTGCTGTTCTTCACCAACCCTGCCGACACGCACAAGAGGATCAACCTCACCCTGCGCTGGTCCTTCACGAACGGCTCGTCCTGGGAGTCGGCCCTGGTGAAGCTGTGGACAGGCCCCAGCGGCTACTCCTCCATGACCGCGCTGAGGGGCAACAAGGTGGAGGACCGCAAATACATCTTTGTGATCTACGAGAAGGGCCACCAGGACCCCTACGAGACTATCTCCATTGCCAAGATCCACCTGTTTGGGGGGCTGTAG

Function

GO:

id name namespace
GO:0005764 lysosome cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K01186 NEU1; sialidase-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006371 True 1182 mRNA 0.63 6 3356795 3361837

Neighbor

gene id symbol gene type direction distance location
AMCG00006372 NA coding downstream 20542 3329356 ~ 3336253 (-)
AMCG00006365 NA coding downstream 152908 3178729 ~ 3203887 (-)
AMCG00006362 NA coding downstream 217260 3137907 ~ 3139535 (-)
AMCG00006363 NA coding downstream 232595 3120277 ~ 3124200 (-)
AMCG00006361 NA coding downstream 239120 3112543 ~ 3117675 (-)
AMCG00006376 LOC101471702 coding upstream 77674 3439511 ~ 3452179 (-)
AMCG00006377 LOC103388862,LOC106582320,LOC103356805 coding upstream 114154 3475991 ~ 3479508 (-)
AMCG00006380 NA coding upstream 144474 3506311 ~ 3515208 (-)
AMCG00006381 gtf2h4 coding upstream 153871 3515708 ~ 3524019 (-)
AMCG00006382 NA coding upstream 202392 3564229 ~ 3565417 (-)
G109294 NA non-coding downstream 69566 3286270 ~ 3287229 (-)
G109163 NA non-coding downstream 524466 2818469 ~ 2832329 (-)
G109099 NA non-coding downstream 958805 2394749 ~ 2397990 (-)
G109090 NA non-coding downstream 966243 2346522 ~ 2390552 (-)
G109334 NA non-coding upstream 5360 3367197 ~ 3369548 (-)
G109432 NA non-coding upstream 186777 3548614 ~ 3561944 (-)
G109439 NA non-coding upstream 224759 3586596 ~ 3655123 (-)
G109472 NA non-coding upstream 443819 3805656 ~ 3807787 (-)
G109483 NA non-coding upstream 464673 3826510 ~ 3834423 (-)
AMCG00006354 NA other downstream 462261 2888486 ~ 2894534 (-)
AMCG00006344 NA other downstream 769949 2581337 ~ 2586846 (-)
AMCG00006328 NA other downstream 1026804 2324131 ~ 2329991 (-)
G108938 NA other downstream 1226540 2097818 ~ 2130255 (-)
AMCG00006313 NA other downstream 1332652 2020001 ~ 2024143 (-)
AMCG00006390 NA other upstream 337048 3698885 ~ 3728519 (-)
AMCG00006398 NA other upstream 368205 3730042 ~ 3815517 (-)
AMCG00006414 NA other upstream 790979 4152816 ~ 4158123 (-)
G109633 NA other upstream 803097 4164934 ~ 4165600 (-)
AMCG00006415 NA other upstream 806213 4168050 ~ 4177052 (-)

Expression


Co-expression Network