AMCG00006376 (LOC101471702)


Basic Information

Item Value
gene id AMCG00006376
gene name LOC101471702
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3439511 ~ 3452179 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006376
atgggctatatcaGACTCGAGATGTCAAAGTCAATTAGAAAGCACACCTGCTGTATCTCTATGAGTGGGGCAGCTGCGCGGCTCTCCATCACTCACAGCCGGATTTTGGACGGCAGGGGGTTCCGATCACGCATTGTCGGAGATGAGAGGAGCAATCAGCCCTACGcactcagtTGTGACCCGGGTGAGGCGACGAAGCTGCTGTACGACCTGCTGTACACCGAGCCCATTAAGATTGTGCTAATGCCCGGCTGCAGCTCCGTCTCTACACTGGTAGCGGAGGCGGCGCGGATGTGGAACCTCATAGTGttgTCGTACGGCTCCAGCTCCCCCGCCCTGTCCAATCGCGAGCGCTTCCCCACGTTCTTCCGCACGCACCCCAGCGCCACCCTGCACAACCCCACCCGCGTGCAGCTCTTCCAGAAGTGGAAGTGGACCAAGATTGCCACCATCCAGCAGACCACGGAGGTCTTCACCtcgACCCTGGATGATCTGGAACAGAGAGTGAAGGAGGCTGGGATTGAGATCAGTGTCAGACAGAGCTTTCTGTCGGATCCTGCTGTCGCTGTCAAGAACCTCAAGcGTCAGGACGCTCGGATCATTGTGGGGCTGTTCTACGAGACGGAAGCTCGGAAGGTGTTCTGTGAGGTGTTCAAGGAGAAGCTGTATGGGAAGAAGTACGTGTGGTTCCTGATTGGCTGGTACGCCGACAACTGGTTCAAGACCAAGGACCCGTCCATCAACTGCACTGTGGAGAACATGACCGAGGCCGTGGAGGGGCACGTCACCACAGAGATCCTCATGCTGAACCCAGAGAGTACCAAGGGGGCATCCAACCTGACGTCTCAAGAGTTCCTGGAGAAGCTGATGTCACGGCTGGGGGGCATGAACCCTGAGGAGACGGGAGGCTTCCAGGAAGCCCCGCTGGCGTACGACGCGGTGTGGGCGCTGGCGCTGGCACTCAACAAGACGGCCTCCGCGCTGGCCAAGAAGGGGCTGCGGCTGGAGGACTTCAActacaacaaccacaacatAACCAACGAGATCTACAAAGCCATGAACTCATCCTCCTTCGACGGGGTGTCGggtcaCGTCGTGTTTGATGCTCAGGGGTCTCGAATGGCCTGGACTCAGATCGAGCAACTGCAGGgTGGGAGCTATAAGAAGATCGGATACTACGACAGCACCAAGGGCAACCTCTCCTGGCTGGGCAATGACAAGTGGATCGGCCTGGCCCCCCCCGCTGACCAGACAAAGGTGATCGTGGAGTACAGGTTTCTCTCCCAGAAGCTCTTCGTCTCGGTCGCGGTGTTCGCAGGCCTGGGCATCTTACTGGGCATCATCTGCCTCACCTTTAACATCTACAACAGCAACGTCAGgtataTCCAGAACTCACAGCCCTATCTGAACAATATGACGGCGGTGGGCTGTATGATGGCTCTGGCCGCTGTGTTCCCTCTGGGCATCGACGGGAACCACGTACGCCGCAGCCAGTTCCCCTTCGTCTGCCAGgcTCGGCTGTGGCTGCTGGGTCTGGGCTTCAGTCTGGCCTATGGCAGCATGTTCACCAAGATCTGGTGGGTCCACACGGTCTTCACCAAGAAggaagagaagaaggagaagcgCAAGCAGCACCTGGAGCCGTGGAAGCTCTATGCCACAGTGGGTGTCTTGCTGGCCGTGGATATCCTCTCTCTGCTCATCTGGCAGATTGTCGACCCGCTGCACATCACCATAGAGGTCCTGTGTATGATCACGGCTCCAGTCACAATGATCCTGAGCTCCCAGCAGGACGCATCCTTTGCCTTCGCCGCGTTGGCCATAGTCTTCTCTGTGTACATCACTCTGGTGatGCGGCGTCTAATCACACGGGGCGAGTGGCAGTCGGAGCAGCAGGACACCATGAAGACGGGCTCCTCCACCAACAACAATGATGAGGAGAAATCCCGgcagctggagaaggagaacAGAGAGCTGGAGAAGATCATCACCGAGaaGGAGGAGCGGGTGTCAGAGCTGCGTCACCAGCTGGCAGAGAGACAGGCCCTGCGCTCTCGCCGCCGCCCCTCAGCCAACGAGAGCAAGCCTCACCCACCCCCCGGCTACCCCCTGCCCAACCCCTCCTCCGACAACCaccaggcccccttccccaacTCCTCCAGCCTGGCGCCACTGTACCAGGCGCCACTGACACCAGGAGGACCCGAGTCTGCATCGAGGACGACGGTGGGAACAGGATTATTGATGGGCTCCGAGAGTGGGGTTGGGGACCCGGGGCCAGGGAGGGAACCCATCTCCCGCGCTGCTAACTGGTTAGTGGAGACGAGGACGGGCATCAACAGCGTGCCAGAGGAGGGCTGGAAGCGCAGGGGTCCtCACTGTATCGGCCGACGGATGAACGGGGACCAGTCCCTGCACCCCACTTCTCCGTCAGCCAGGAGAGTGTCCGAC

Function

NR:

description
gamma-aminobutyric acid type B receptor subunit 1 isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0035095 behavioral response to nicotine biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004965 G protein-coupled GABA receptor activity molecular_function

KEGG:

id description
K04615 GABBR; gamma-aminobutyric acid type B receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006376 True 2451 mRNA 0.59 20 3439511 3452179

Neighbor

gene id symbol gene type direction distance location
AMCG00006371 NA coding downstream 77674 3356795 ~ 3361837 (-)
AMCG00006372 NA coding downstream 103258 3329356 ~ 3336253 (-)
AMCG00006365 NA coding downstream 235624 3178729 ~ 3203887 (-)
AMCG00006362 NA coding downstream 299976 3137907 ~ 3139535 (-)
AMCG00006363 NA coding downstream 315311 3120277 ~ 3124200 (-)
AMCG00006377 LOC103388862,LOC106582320,LOC103356805 coding upstream 23812 3475991 ~ 3479508 (-)
AMCG00006380 NA coding upstream 54132 3506311 ~ 3515208 (-)
AMCG00006381 gtf2h4 coding upstream 63529 3515708 ~ 3524019 (-)
AMCG00006382 NA coding upstream 112050 3564229 ~ 3565417 (-)
AMCG00006388 NA coding upstream 222651 3674830 ~ 3678417 (-)
G109322 LOC103376870 non-coding downstream 6241 3340118 ~ 3433270 (-)
G109334 NA non-coding downstream 69963 3367197 ~ 3369548 (-)
G109294 NA non-coding downstream 152282 3286270 ~ 3287229 (-)
G109163 NA non-coding downstream 607182 2818469 ~ 2832329 (-)
G109099 NA non-coding downstream 1041521 2394749 ~ 2397990 (-)
G109432 NA non-coding upstream 96435 3548614 ~ 3561944 (-)
G109439 NA non-coding upstream 134417 3586596 ~ 3655123 (-)
G109472 NA non-coding upstream 353477 3805656 ~ 3807787 (-)
G109483 NA non-coding upstream 374331 3826510 ~ 3834423 (-)
G109514 NA non-coding upstream 414541 3866720 ~ 3867041 (-)
AMCG00006354 NA other downstream 544977 2888486 ~ 2894534 (-)
AMCG00006344 NA other downstream 852665 2581337 ~ 2586846 (-)
AMCG00006328 NA other downstream 1109520 2324131 ~ 2329991 (-)
G108938 NA other downstream 1309256 2097818 ~ 2130255 (-)
AMCG00006313 NA other downstream 1415368 2020001 ~ 2024143 (-)
AMCG00006390 NA other upstream 246706 3698885 ~ 3728519 (-)
AMCG00006398 NA other upstream 277863 3730042 ~ 3815517 (-)
AMCG00006414 NA other upstream 700637 4152816 ~ 4158123 (-)
G109633 NA other upstream 712755 4164934 ~ 4165600 (-)
AMCG00006415 NA other upstream 715871 4168050 ~ 4177052 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009391 gabbr1a coding NC_007126.7 CM002899.2 34717514 ~ 34845414 (-)
grasscarp (Ctenopharyngodon idella) CI01000095_02418530_02482423 GABBR1B, GABBR1, GABBR1A coding CI01000095 null 2418360 ~ 2482423 (-)