AMCG00006378


Basic Information

Item Value
gene id AMCG00006378
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3541718 ~ 3552354 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006378
ATGATGTCAACTTTTCTCCATTCTCCAGTCTCCTCAGCTCCTGTCTCAGTGTCAGTGAGAGTCGGGGACTCCGTCACTCTGCCCTGTGATGGATCAGCCTACAGAGGGACTCCTGTAGAGCAGCTCTACATTAAGTGGCAGACAGTGAATCAGGATGTCTATGTGTTCAGGAGAGGCACAGTCTACCCCGGTCCTGGGTTTGAGAACAGGACTGAGGTTCCCCTGGAGAGGATCAGACAGGGGGACTTCTCTCTGACCCTCCAGCACACACTGCTCTCTGATGGAGAGATATACGAGTGTTTCTGTGAGGGACAGAGAAAACAGGATGCTTTTCTCGGAGATGTCAGTCTCACCATCACAGGCCGTGAGGAGAGCAGCTCTGTCTCCTATGGGCAGCCCCTGAGCCTCCGTCTGTACAGCAGGGCAGCTGTGACAGTGTGGTTTAACCCTGCGGGCGCTGGAGCCTCTCTCCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGTGCCTCAAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGGCTCCTACACAGTGCTGGACTCCCAGAGCAGAGAGACCATCAGCACTGTGAACGTCACTGTGACAGCTCACAGAGACGCCCTCACCCTGCCATCTGGAGCCTCGCTGTCTCTCCCGCTCTACTCTCCTGGGCCGGTGGaggtgctgtttgctgctgcaggagagggagcctgtgtctcagtgtgcgcTGTGGAGAGGGACGCAGCAAGTCGCCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAACGGTTCTCTGACCCTGCGCTCACTCACAGCAGCTGACCAGGGAAACTACACACTGAGGGAGTCAGGGAACAACCGCACTGTCAGCAacgtctctgtgtctgtgtgtgacactGTGAGAGCTCACAGTGACGCCCTCACCCTGCCGTCTGGCACAGACCTGTGCGTCTCTCTGCTCACTGCAGAGCCGGTGGAGGTGCTGTTTGCTCCTGTGGGAGACCAAACCTCTGTCCCAGTGTGCTCTGTGGAGAGGGACACTGTGTTCAGACCCGGCCCCGGGTACCAGCCCAGAGTGTCAGTGCAGAACGGCTCTCTGACCCTGCGCTCACTCACAGCAGCTGACCAGGGAAACTACACACTGAGGGAGTTAGACAGCAGCAACACCATCAACaccgtctctgtgtctgtcactgCAGAGGaatCACTGTGGGTTGGCCTGGTCACAGGGATCACTTTGCTGATCTTAGCAGTGCTGGGACTCGCTCTGCTCTATTGGTACAGACGGTGTCGTCATAAGAAAGTGCCCCAGGTGCACAGTGTGCAGCCCACAGACGAGGACTGTAATTCAGACCAGGAGGGCTCAGAGAGCTCCGCCCTGAAGACAAGCAGGCCAACCCGAGACATAGCCAATGGGAACAGGAGTTTGATGGGGAGGGAACACATTGTGTAgattgtgtctgtgctgtgtgtgtatttctcacTGGTGCTAGTGGTCTTATCAGATTGGAAGAgtcattattttcttgtattttccaAGATCAATGTGACACCTGTGGCTATATTTGTATCATCTTGTATCATCTGTACACttggaattcatttttattttctaaatcactgcaattgtacatattttttaaattatatattcacAGTACACCTACCCACTGCAGGACCGTGgggatgtaaatatatattcactttaACAACTAGATACATTTCTTCCACTTCCTatggttttgtaaaataaatgcattctcGTTTGTTTTATATGAA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006378 True 1826 mRNA 0.53 7 3541718 3552354

Neighbor

gene id symbol gene type direction distance location
AMCG00006374 NA coding upstream 113157 3426425 ~ 3428561 (+)
AMCG00006375 NA coding upstream 120200 3419315 ~ 3421518 (+)
AMCG00006369 NA coding upstream 186912 3352205 ~ 3354806 (+)
AMCG00006373 NA coding upstream 192497 3342539 ~ 3349221 (+)
AMCG00006370 NA coding upstream 240359 3292743 ~ 3301359 (+)
AMCG00006383 NA coding downstream 33101 3585455 ~ 3596853 (+)
AMCG00006384 NA coding downstream 71593 3623947 ~ 3632121 (+)
AMCG00006386 NA coding downstream 100885 3653239 ~ 3668931 (+)
AMCG00006389 NA coding downstream 196649 3749003 ~ 3763628 (+)
AMCG00006392 NA coding downstream 262259 3814613 ~ 3819824 (+)
G109301 LOC103376870 non-coding upstream 147787 3340089 ~ 3393931 (+)
G109260 NA non-coding upstream 305317 3234905 ~ 3236401 (+)
G109218 NA non-coding upstream 472490 3016779 ~ 3069228 (+)
G109217 NA non-coding upstream 513072 3004856 ~ 3028646 (+)
G109011 LOC100846954 non-coding upstream 1023184 2436058 ~ 2518534 (+)
G109405 NA non-coding downstream 146754 3699108 ~ 3714779 (+)
G109392 NA non-coding downstream 170165 3722519 ~ 3755041 (+)
G109412 NA non-coding downstream 177533 3729887 ~ 3730840 (+)
G109396 NA non-coding downstream 220195 3772549 ~ 3774544 (+)
G109523 LOC100846954 non-coding downstream 357607 3909961 ~ 3911048 (+)
G109362 NA other upstream 35039 3503181 ~ 3506679 (+)
G109309 NA other upstream 176153 3361354 ~ 3365565 (+)
AMCG00006368 NA other upstream 255539 3274782 ~ 3286179 (+)
AMCG00006366 NA other upstream 289638 3242937 ~ 3252080 (+)
G108626 rps5,LOC107086176 other upstream 1727108 1637397 ~ 1814610 (+)
AMCG00006379 NA other downstream 17685 3570039 ~ 3621796 (+)
AMCG00006385 NA other downstream 46887 3599241 ~ 3612758 (+)
AMCG00006387 NA other downstream 85389 3637743 ~ 3648911 (+)
AMCG00006393 ppp1r11,LOC107711309 other downstream 306580 3858934 ~ 3864732 (+)
G109538 NA other downstream 411243 3963597 ~ 3963996 (+)

Expression


Co-expression Network