AMCG00006387


Basic Information

Item Value
gene id AMCG00006387
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3637743 ~ 3648911 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006387
ATGAATGAGCCCCCTCATACCTCCCTAAGAGGAGAAAGTGTTTTTTCCTGCAGCCGTGGCCGCTCGGGTTCCCAGCTGCTGGACAGCGCTATGGCCGGGCAGTGCGGAGCGCCGCTGCTGCTCTCCCTCCTCCTTCTGGTCCAGCGGGAGAGTCTGTGTGAAGCGGCCGAGCGGCGGACTGTCAGAGCCGGGGACACCGTCACCCTGGACTGCGACATCGGATTTAAGCAAGAGACTCTGTGGTTTGGGCAGCGTGACGCGGAGACGCCATTCCTGAGCATTTTAGCAACAAAAAAAACGGCAGTAGACGAACTCTTCTCACGGTTCTCCAGAGGCGACGACCCCCGCTTCACTGTGGTGTGGGAGTCGGATAAAGACCCCCGCGGCTCCGCCAGTCTGCGCATCCAGAGCATCACCGAGGCGGACCTGGCGCTGTACTACTGcgtggagagaggagagggagggctTGTGTTGGGGAATGGGACCCGGCTCGTCTACGgtGGTGTTCAGTGTGTCGGGGCGCAGAGGAGTCCAGGGCAGAGCACGAGTGAAGGAGCAGCGCAGGGGGAAGATGCAGAGTCAGATTACGCCACTGTAGAAGTTCACACAGACTACAACTATGCCAATTCAGAGCAGGCTGTGTATATTCTCCAGGGTAAGTGTGGGTTGTGTGTCAGTAATGACGTAGAGACTGGCAGATGCGTGTCATTGAGCGCAGAGAGCAGACTGCGCATGCGCTACACATCAAGAGAGACGGAGAAAGAGATGCCCCCCGACTGCCCGCTGGAAAGGAGATGGCACCGTGTGGTTTCAGGGTACAGGCCGGGAGAGGCCCTCCGCAGCCCCGGGTCTGAGATCGGCTGCGGCACGCCTCCTTCTCGGACGCAGGGATCTTTGACTGCTTATGGGCGGAGAGGGAGCCGGGGAGAATTCCTTGGCAATGTGGAGCTCTCTGTGCAGGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGCTCCCGAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGGCTCCTACACAGTGCTGGACTCCCAGAGCAGAAAGGCCATCAGCACTGTGAACGTCACTGTGACAGCTCACAGAGACGCCCTCACCCTGCCGTCTGGAGCCTCGCTGTCTCTCCCGCTCTAA
>TU136960
TCTCACAGCCCTGTCTGCGTCCTCTACGACAAACCGCAGCCACCCTGTCTGCACGTCTGTGTCAGGCCCTGCAGCTGCTCGGGCTTGTTGTATGCGCTTCATTTCCTGCTCGGTGTTGTGCATGTACAGGTATAGGCCTATGTGTCTATCCGCACTtttgtgttcgtctgtgtgAGAgcgtctctgtctgtgtctgtgtatttgcatttgtgaatgtgtgtgagtgtgaatatATCTGCAGCTGTGTGTCAACGAGCCTGTGTGTGACtgaaacagcacaacacagagctGCCGTGTGCGATGCTCTGAGGGTCTACAACACCCCCTCATTTCCTCTCGGTGAGGATGACAATACAGACCTGTGGGCTACATTGCTCTCTTTTTGGTAAACAGAAACCAATCACCTGGTTTCCTGACCAATGAATGAGCCCCCTCATACCTCCCTAAGAGGAGAAAGTGTTTTTTCCTGCAGCCGTGGCCGCTCGGGTTCCCAGCTGCTGGACAGCGCTATGGCCGGGCAGTGCGGAGCGCCGCTGCTGCTCTCCCTCCTCCTTCTGGTCCAGCGGGAGAGTCTGTGTGAAGCGGCCGAGCGGCGGACTGTCAGAGCCGGGGACACCGTCACCCTGGACTGCGACATCGGATTTAAGCAAGAGACTCTGTGGTTTGGGCAGCGTGACGCGGAGACGCCATTCCTGAGCATTTTAGCAACAAAAAAAACGGCAGTAGACGAACTCTTCTCACGGTTCTCCAGAGGCGACGACCCCCGCTTCACTGTGGTGTGGGAGTCGGATAAAGACCCCCGCGGCTCCGCCAGTCTGCGCATCCAGAGCATCACCGAGGCGGACCTGGCGCTGTACTACTGcgtggagagaggagagggagggctTGTGTTGGGGAATGGGACCCGGCTCGTCTACGAAACCAGTAACCAGCACCCAGCCCCCTGTGTGCTGAGCTGGGCGCtgctgggctgtgtgtctgcaggctgCCTC

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006387 True 1179 mRNA 0.60 8 3638162 3648911
TU136960 False 992 TUCP 0.57 3 3637743 3640661

Neighbor

gene id symbol gene type direction distance location
AMCG00006384 NA coding upstream 5622 3623947 ~ 3632121 (+)
AMCG00006383 NA coding upstream 40890 3585455 ~ 3596853 (+)
AMCG00006378 NA coding upstream 85389 3541718 ~ 3552354 (+)
AMCG00006374 NA coding upstream 209182 3426425 ~ 3428561 (+)
AMCG00006375 NA coding upstream 216225 3419315 ~ 3421518 (+)
AMCG00006386 NA coding downstream 4328 3653239 ~ 3668931 (+)
AMCG00006389 NA coding downstream 100092 3749003 ~ 3763628 (+)
AMCG00006392 NA coding downstream 165702 3814613 ~ 3819824 (+)
AMCG00006396 NA coding downstream 174660 3823571 ~ 3824069 (+)
AMCG00006394 NA coding downstream 176657 3825568 ~ 3826749 (+)
G109389 NA non-coding upstream 88755 3548614 ~ 3548988 (+)
G109301 LOC103376870 non-coding upstream 243812 3340089 ~ 3393931 (+)
G109260 NA non-coding upstream 401342 3234905 ~ 3236401 (+)
G109218 NA non-coding upstream 568515 3016779 ~ 3069228 (+)
G109217 NA non-coding upstream 609097 3004856 ~ 3028646 (+)
G109405 NA non-coding downstream 50197 3699108 ~ 3714779 (+)
G109392 NA non-coding downstream 73608 3722519 ~ 3755041 (+)
G109412 NA non-coding downstream 80976 3729887 ~ 3730840 (+)
G109396 NA non-coding downstream 123638 3772549 ~ 3774544 (+)
G109523 LOC100846954 non-coding downstream 261050 3909961 ~ 3911048 (+)
AMCG00006379 NA other upstream 15947 3570039 ~ 3621796 (+)
AMCG00006385 NA other upstream 24985 3599241 ~ 3612758 (+)
G109362 NA other upstream 131064 3503181 ~ 3506679 (+)
G109309 NA other upstream 272178 3361354 ~ 3365565 (+)
AMCG00006368 NA other upstream 351564 3274782 ~ 3286179 (+)
AMCG00006393 ppp1r11,LOC107711309 other downstream 210023 3858934 ~ 3864732 (+)
G109538 NA other downstream 314686 3963597 ~ 3963996 (+)
G109570 NA other downstream 503905 4152816 ~ 4155749 (+)
AMCG00006413 NA other downstream 510612 4159523 ~ 4167952 (+)
G109714 NA other downstream 828023 4476934 ~ 4477570 (+)

Expression


Co-expression Network