AMCG00006390


Basic Information

Item Value
gene id AMCG00006390
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3698885 ~ 3728519 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006390
ATGGACGTGGATCCTGCGGCTCTCGGCTCAGTGGCACCCAGACGAGATGTCAATCTCAAAAGAGAAGTGATCATCAAGGCACTTTGCCTCTACCTTGGCGAGGATGATGGATCGCTCATCAAGACCCCCGGTACCGCAGCGGAGGAGCCCGAGTCCAGCTCCACTCTCCGGGCTCCAGACTCCGGAGTCGCACTCATGCCAGCCCTTCTGCCCTTTACGTCCAATCCGACGTGCAACGTCACCCAGCGTGACCACGTCCTGCGCCTGTCCGAGCGGATTCCTGGGCTGCTCCTGGCTGTGACACTGGTGGGAGtctccTCAGCTCCTGTCTCAGTGAGAGTCGGGGACTCTGTCACTCTGCCCTGTGATGGATCAGCCTACAGAGGGACTCCTATAGATCACATCTACATCAAGTGGGAGACAGTAAATCAGCGTATCTGTGAGTTTAGTTTAGGCCGTGAGGAGAACACCTCTGTCTCCTATGGGCAGCCCCTGAGCCTCCGTCTGTACAGCAGGGCAGCTGTGACAGTGCGGTTTAACCCTGCGGGCGCTGGCGCCTCTCTCCCAGTGTGTGTTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGGACCCGAGTCTCAGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTCCACTGACCAGGGCACCTACATAGTGCTGGACTCCCAGAGCAGAAAGACCATCAGCACTGTGGTGTTCAGTGTGTCGGGGCGCAGAGGAGTCCAGGGCAGAGCAGGAGTGAAGGAGCAGCGCAGGTATTGTGTACAGTCCTGA
>TU137050
CACTATACATTCATCCTCACCAACAGCCTCTCTCTTCaattcttcctcctcctctctctctccatctccctctccctcctcctctctctttccatctccctctccctgtgcCCCCTGTGTGCTGAGCTGGGCGCtgctgggctgtgtgtctgcaggctgCCTCCTGCTCTCCGGCTGTCTCTGCTGCCTCTGGAGCAGGAGAGGTGGTGTTCAGTGTGTCGGGGCGCAGAGGAGTCCAGGGCAGAGCAGGAGTGAAGGAGCAGCGCAGGAGTGAAGGAGCAGCGCAGG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04640 Hematopoietic cell lineage
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006390 True 807 mRNA 0.59 7 3713752 3728519
TU137050 False 288 lncRNA 0.61 3 3698885 3714779

Neighbor

gene id symbol gene type direction distance location
AMCG00006388 NA coding downstream 20468 3674830 ~ 3678417 (-)
AMCG00006382 NA coding downstream 133468 3564229 ~ 3565417 (-)
AMCG00006381 gtf2h4 coding downstream 174866 3515708 ~ 3524019 (-)
AMCG00006380 NA coding downstream 183677 3506311 ~ 3515208 (-)
AMCG00006377 LOC103388862,LOC106582320,LOC103356805 coding downstream 219377 3475991 ~ 3479508 (-)
AMCG00006391 NA coding upstream 6772 3735291 ~ 3742281 (-)
AMCG00006401 NA coding upstream 47547 3776066 ~ 3778504 (-)
AMCG00006399 NA coding upstream 94396 3822915 ~ 3823973 (-)
AMCG00006397 NA coding upstream 110529 3839048 ~ 3847723 (-)
AMCG00006400 NA coding upstream 119845 3848364 ~ 3858917 (-)
G109439 NA non-coding downstream 43762 3586596 ~ 3655123 (-)
G109432 NA non-coding downstream 136941 3548614 ~ 3561944 (-)
G109322 LOC103376870 non-coding downstream 265615 3340118 ~ 3433270 (-)
G109334 NA non-coding downstream 329337 3367197 ~ 3369548 (-)
G109294 NA non-coding downstream 411656 3286270 ~ 3287229 (-)
G109472 NA non-coding upstream 77137 3805656 ~ 3807787 (-)
G109483 NA non-coding upstream 97991 3826510 ~ 3834423 (-)
G109514 NA non-coding upstream 138201 3866720 ~ 3867041 (-)
G109540 NA non-coding upstream 247684 3976203 ~ 3976617 (-)
G109609 NA non-coding upstream 248190 3976709 ~ 4035331 (-)
AMCG00006354 NA other downstream 804351 2888486 ~ 2894534 (-)
AMCG00006344 NA other downstream 1112039 2581337 ~ 2586846 (-)
AMCG00006328 NA other downstream 1368894 2324131 ~ 2329991 (-)
G108938 NA other downstream 1568630 2097818 ~ 2130255 (-)
AMCG00006313 NA other downstream 1674742 2020001 ~ 2024143 (-)
AMCG00006398 NA other upstream 1523 3730042 ~ 3815517 (-)
AMCG00006414 NA other upstream 424297 4152816 ~ 4158123 (-)
G109633 NA other upstream 436415 4164934 ~ 4165600 (-)
AMCG00006415 NA other upstream 439531 4168050 ~ 4177052 (-)
AMCG00006429 NA other upstream 541897 4270416 ~ 4277155 (-)

Expression


Co-expression Network