AMCG00006392


Basic Information

Item Value
gene id AMCG00006392
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3814613 ~ 3819824 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006392
ATGGAGCTGTACTGCTGTGTAACGGTGACCGTCCTGGTCGGTTGGATCTCGGTTGTTGTTGATGAGTGGACGAAGGAGGAACTGCACAGAGCGCTGGACTGGAGAGCGGTGCCCCAGGCAGTCGTGCACCTCCTGGAGGCTCTTCTCCTGCTGGGCGACTCGTTGACCTGCGTCCTCCGGGTGGCATTCTTCCTCAGCCTGGCCGCCACCCACCTTCTCAGGGCTGGGGTGTGCCTGGTGGGGGACTCCCTGCGTTTCATCCAGAAGGGGGCACTGCATCTTTGCAGCGCAGAGTGGCGGAAAGAGAGGGGTCGGGAAGGGGATAGCCAGGCTCACGGTACAGTGAACAACACTGTGCACAGCAGCGGCGGATCAGTTTCGATTCCGCAGAAATCAGAGGCAATGGAGCAGCTCTGCAGTGTGTTGGTGGCTGTCGTCTGTGTAATGTTGGTGATTGACGATGGGACGATGTACCATTTGCAGCAGTGTATGCATCAACTGACCAGGTCTCTGGGCCAACTGTACCTGGCCACTGTGACCCTGCGCTCCACCCTGTCCCAGCTCGGCCTCTCTGTCCTGCTGCTGTGCAAAACGAGCTACCACCTGTGGTGCACCATGTATTACTGCAATAGCACTAAGCAGCTCAGGCAGTCGGCCAACGAGGAGATCAAGTACGACAAGTGGCGCATCTTGGACGAAAGAGCCCAGAGAGAGGGCAAGATGGCCGGTAGTCAACTGTTGCTCGGCCTGAGATCTGTCGCCCAGGCTGTGGTGCGTCTGTTTCAGGCGCCGCTCGTACTGGGAGACTCGCTCTACCCTTTACTGGAGTTTGTGTTTTACCTCTGCCTGTCCGCCTCTCACCTTCTCCGGGCCATACTCTTCCTGCTGGTTGCCTCCCTGCGCTTCTGCCAGAAGAGGATGCTGTGGCTGTGCGGGAGGGAGTGGCGGGAGGAGTTCCAGCAGGAGCCCAGGCCATCTTGGCaggtgaagagagagaggtgggctCTGACCGAGGGACCCCTCCACAATTAAAGACAATAATGAAATGTCTTTGTCATGGCCCGTGGAGAGTTAGTTATTTGTTTGCAGGTTTTAACACTTTTAACTGATATCCACTACAAGGCTTTTGTCATAaaattatttctgtttgaaaatTGAACTGTAATGTGATTGTACAGAAGTCCGGATTCAAATCACATTGTACATGTATACTGTGTCCCTTCAGTAGCGATTCAATAGATGTACCACCATATCTTCTCAATCAATACCATTCATAGCACCCACACACTTTTCAATATCCCAATTAACAAGTATtagtactcgtattattttgatttcccctactCCTTTTCCcatggcccttgactgtgacctaacatctggTCTGCTCTCAGCTTTCACAATCCTTTTACAattgtaagacctcatttactGTATccacttgtgtaaactggaatttgtaaaatgcattaggcctatgctttgaattgcactgtattttatacatttgagtTTGTAGTGTTTCATGccttgtactgtactgtatttttgcaatttgtattgcgcttatattttgtaagttgccctggataagggtgtctgccaataaataaataataatca

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006392 True 1623 mRNA 0.50 5 3814613 3819824

Neighbor

gene id symbol gene type direction distance location
AMCG00006389 NA coding upstream 50985 3749003 ~ 3763628 (+)
AMCG00006386 NA coding upstream 145682 3653239 ~ 3668931 (+)
AMCG00006384 NA coding upstream 182492 3623947 ~ 3632121 (+)
AMCG00006383 NA coding upstream 217760 3585455 ~ 3596853 (+)
AMCG00006378 NA coding upstream 262259 3541718 ~ 3552354 (+)
AMCG00006396 NA coding downstream 3747 3823571 ~ 3824069 (+)
AMCG00006394 NA coding downstream 5744 3825568 ~ 3826749 (+)
AMCG00006395 ddx39b,uap56,LOC105012335,LOC104931065,LOC103042292 coding downstream 12437 3832261 ~ 3839998 (+)
AMCG00006404 NA coding downstream 73439 3893263 ~ 3896458 (+)
AMCG00006410 NA coding downstream 100080 3919904 ~ 3920782 (+)
G109396 NA non-coding upstream 40069 3772549 ~ 3774544 (+)
G109392 NA non-coding upstream 59572 3722519 ~ 3755041 (+)
G109412 NA non-coding upstream 83773 3729887 ~ 3730840 (+)
G109405 NA non-coding upstream 99834 3699108 ~ 3714779 (+)
G109389 NA non-coding upstream 265625 3548614 ~ 3548988 (+)
G109523 LOC100846954 non-coding downstream 90137 3909961 ~ 3911048 (+)
G109530 NA non-coding downstream 116156 3935980 ~ 3936902 (+)
G109532 NA non-coding downstream 123945 3943769 ~ 3943994 (+)
G109541 NA non-coding downstream 156904 3976728 ~ 4035308 (+)
G109571 NA non-coding downstream 336140 4155964 ~ 4156206 (+)
AMCG00006387 NA other upstream 165702 3637743 ~ 3648911 (+)
AMCG00006379 NA other upstream 192817 3570039 ~ 3621796 (+)
AMCG00006385 NA other upstream 201855 3599241 ~ 3612758 (+)
G109362 NA other upstream 307934 3503181 ~ 3506679 (+)
G109309 NA other upstream 449048 3361354 ~ 3365565 (+)
AMCG00006393 ppp1r11,LOC107711309 other downstream 39110 3858934 ~ 3864732 (+)
G109538 NA other downstream 143773 3963597 ~ 3963996 (+)
G109570 NA other downstream 332992 4152816 ~ 4155749 (+)
AMCG00006413 NA other downstream 339699 4159523 ~ 4167952 (+)
G109714 NA other downstream 657110 4476934 ~ 4477570 (+)

Expression


Co-expression Network