AMCG00006393 (ppp1r11,LOC107711309)


Basic Information

Item Value
gene id AMCG00006393
gene name ppp1r11,LOC107711309
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3858934 ~ 3864732 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006393
CCTAGATAACGTTTCAGCATTAAACATCACCCCAGTTATTaagaaacaatcaaaacaaacatccTTGCAGTCTGGTCTGTAAAGGTGCATACTAGCGCAGTGCTGTATTTTGCGTCACTGAGTGCAAATATCGTCAGACAGCTACGATCATGTGGTCTGAACCCATCTATCTATCATCTGTCCCCTGAAAAATGTCCATGACATGACCTTTTAGCTAAAGGTCTTAAAGTATCAAAGTAAGGCTAAAACCTGGCACTTCTATCTGGTTATGGTTTTACTTTACTAGGAACCAAAGGTGCGGCGGCCCGTGTTTCCCGGCCGGACCGCGCAGGAGGTGCAGCGGCTGCGCTTCCCCTGCCTTCACAGCAGCGACTCCGGCCACAACAACAACCCCCTCCCCGCCGCATCGTTCAGTATCGAGGTCCATTCCCTCGGCCTGAGCTGTCATCGTTTTAATAAACTGCAGTGTGGTTAGGTACTACTGGTAAGCCGCTGCTGTTTGCGCGTCGTGTGCTTTTTGATTTTTACCCATGATGGCGGAAGCGGCCAGCGGTTCCAGAGAGACGATAACGGAGACGGAGACGGTGCAGACGGACACAGCGCCACCCCAGCAGGAGGGCCGCAGTCTGACCATCAAgctgaggaagaggaagacGGATAAGAAGATCATGTCTGAGTCGGGGACTCTGTCACTCTGCCCTGTGATGGATCAGCCTGCAGAGGGACTCCTATAG
>TU137096
GCGGCTGCGCTTCCCCTGCCTTCACAGCAGCGACTCCGGCCACAACAACAACCCCCTCCCCGCCGCATCGTTCAGTATCGAGGTCCATTCCCTCGGCCTGAGCTGTCATCGTTTTAATAAACTGCAGTGTGGTTAGGTACTACTGGTAAGCCGCTGCTGTTTGCGCGTCGTGTGCTTTTTGATTTTTACCCATGATGGCGGAAGCGGCCAGCGGTTCCAGAGAGACGATAACGGAGACGGAGACGGTGCAGACGGACACAGCGCCACCCCAGCAGGAGGGCCGCAGTCTGACCATCAAgctgaggaagaggaagacGGATAAGAAGGTGGAGTGGTCCAGCGACACTGTGGACAACGAGCACCTGGGCCGGCGGTCATCCAAGTGCTGCTGTATCTATGAGAAGCCACGCCGGTTCGGGGAGAGCTCCTCAGAGAGTGAGGGTGAGGAGGATGGCTGCGGCAGCGTCAACTGCATCATGGGACACCGGCAACGAGCGTCTGACACAGCGCCGCCGGGAGCCGGAGGATCGGGACAGCAGCCACAGCAGGGCCGACACTCGCActgagagccagagagagagagacagaggggaacatacagggagagggaaagagggaggaaaCGGGGAGtgaggagagaagagaggatGCCGAGAGATGGAGTCAGAAAAATCTGATGGAGAAGGAACATAATGTTAAACATAGAGAGGCggaaaacagacacaaacactgatGGTGTCCCACTGACTCCGAAcaaggggaggagagagagagagggagggagacagagacagagagagagagagagagagagagagagagatgggtcaAATATGATTGTATGCCATCTGTCTtccctttcctttctctctctccaccaaactcctccctctttcccctttcttctctccttcccccatctctcgctcgctctctcctGTATAACGACTTGTTGCTGTAGACTCAGTATTGACCTAAGTTGACCAGATGCTgtatatgatattatattttattcccaAGACGCACTATTGACTGGACAGCTGCTGTCTTATTGGAGCTCGTCTGACAGTTTGAATGGGGCCAGTGAGTGGAGTTCACAGCCACCGCACTCACAACATCCGCAGATCCACAGCACTGgtgttaaataatacatgttcaCTCCCCCTGTttgctctcctctctcctgctctaCTGTCTAGTAccatactgcactacactgttCTGTATTGTACTTTACTACACTGTAGCATCAGTCAGTCTTCCAGTGTCTCTACCTTGTACATCTttcacacctctctctctctctctctctctctctctctctctctctctctcctccccatattctgtgtgtgagtttgtaatctctctctctctctctctctactggtGGGGGCAGAGCAGTGATATTACTCCAGTGCTGTAGGACTGGCGCCTGCATCACTCTGTGGTGAGGAACTGTATATAGTGAAAggactgttttatttaattttacaattgttGCGAATATGTTGATATGGTTTTGATTAAAAGAAACTAATCATCCAAACCATCgacgaaacaaacaaaaaaaggtgaTTGTATCAGAACTGTCCATGTCTTCTTCTAGAATGATGGCTGCTTATTAAACTTCAAAAGACcttcaattacaaaaataaataattttaaaatcatgatgatgataaatTGACTGACAATTATGTAAGATATCAGACTGATACAtttacacactgactgactgggaGATGGACTGATTGACTTATTTGCACACTGGCTGATGCACTCACAATAGCCCAGACTCTAAGTGGATCTGGGGGCAAAATCTGAATTTCAGACAATCCCTAATTTAAgcagcgacacacacacacattgctccCCCAAGGTAAAGTGCAGTTTCCCAGTAACCTAATTTCTGACCAGTTCCATATTTGtacacatacagtattttacaCAATTAGAACAGCAGACAAATACCAATCCCAGCTGTATTTACTGTGGTGTGTAGTGTAAAGTGCAGGCTATAACAGTGTGGAACAGCATGGTACGCTGCAGGGTGAGACTTGGCCTAAAGGATTGCAGCACTTCAGTCTTTTTTCATAGTTGCCATAGGAAAACTGTGCCATTCCTCCCTGCAGAGCCGAATCTAATGCCCTGCACTACAGTTTCCAGTGCAGTGTGTCCTACAATATAGATTCTGTTTCTCACAGTGCAGTTTCTAGGGCAGTACACTACAGCGCAGTAGTGCCAAACAAGGTGGGCTCTGCTGGTCCCTCCCTGATTGTATTCCAGtccatactatactatactatactacaccaCACCGCACAACTCTCCAACTCTCCACTGTGTTGCACTGTGTCGTGTTGTGTTCTAGTGTGTCGGTAGATGTACACGGGGCCCCTCACCTTCAAACTCCATCAGTGCTGGGCAGGACAGTTCAGTGTGGTTGCCCACAATATCCCACTGATCCAGTACTGGCCAGTCACAGGGCCCCTTCACAACAGCCCATCAAGctccacacagcacagcacctcTCACAGGACAGGCCGGTACTCACAGGCAGGCCtgtcccaatacttttggtATAGTAGTGAATGACTGGAAGAAATAATTGATCTTCTATTCACAGGGAAAGAGGGAGATATTGCTGGGAGGGAGAAATGTCTaggacattgtgtgtgtgtgtgtatatatatactgattgTTGCTGTCACTGCATCCCCTACACACATTTGATGGGATTCACATTAATATAAACCAACCACAAACACATGAAATCAGcataaatggatggatggattgtaTTATCAAATTCTTAAGATTTCATTACTCCTGTGTATGCCAAAATGAGGCATGGAAATGATTTTAATGATGTGATAAACTGTATGCATCTTTCTGTATAGAGATCATCATTAAAGACATGTTTGAGTTCTGTGTCAAGTCAcg
>TU137110
GAGTCGGGGACTCTGTCACTCTGCCCTGTGATGGATCAGCCTGCAGAGGGACTCCTATAGAGCAGATCTACATTAAATGGGATGGAGGATCAGAGGTACCATGGCCCAGGGTTTGAGAACAGAGCTGAGCTTCCCCTGGACAAGATCAGACAGGGGGACTTCTGCCTGACTCTCCAGCTCCCCTCCTTCTCTGATGTAGACATGAGAGGGTCTGGGGGAGAGGGATGGGGCGCCGGCTGTGGTCACTG

Function

symbol description
ppp1r11 Predicted to enable protein phosphatase 1 binding activity; protein serine/threonine phosphatase inhibitor activity; and ubiquitin protein ligase activity. Predicted to be involved in defense response to Gram-positive bacterium; negative regulation of macromolecule metabolic process; and ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus. Orthologous to human PPP1R11 (protein phosphatase 1 regulatory inhibitor subunit 11).

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006393 False 734 mRNA 0.52 3 3858934 3864544
TU137096 True 2946 TUCP 0.47 3 3859273 3863270
TU137110 False 248 lncRNA 0.57 1 3864485 3864732

Neighbor

gene id symbol gene type direction distance location
AMCG00006395 ddx39b,uap56,LOC105012335,LOC104931065,LOC103042292 coding upstream 18936 3832261 ~ 3839998 (+)
AMCG00006394 NA coding upstream 32185 3825568 ~ 3826749 (+)
AMCG00006396 NA coding upstream 34865 3823571 ~ 3824069 (+)
AMCG00006392 NA coding upstream 39110 3814613 ~ 3819824 (+)
AMCG00006389 NA coding upstream 95306 3749003 ~ 3763628 (+)
AMCG00006404 NA coding downstream 28531 3893263 ~ 3896458 (+)
AMCG00006410 NA coding downstream 55172 3919904 ~ 3920782 (+)
AMCG00006409 NA coding downstream 56502 3921234 ~ 3921928 (+)
AMCG00006408 NA coding downstream 57689 3922421 ~ 3924520 (+)
AMCG00006403 NA coding downstream 214894 4079626 ~ 4082166 (+)
G109396 NA non-coding upstream 84390 3772549 ~ 3774544 (+)
G109392 NA non-coding upstream 103893 3722519 ~ 3755041 (+)
G109412 NA non-coding upstream 128094 3729887 ~ 3730840 (+)
G109405 NA non-coding upstream 144155 3699108 ~ 3714779 (+)
G109389 NA non-coding upstream 309946 3548614 ~ 3548988 (+)
G109523 LOC100846954 non-coding downstream 45229 3909961 ~ 3911048 (+)
G109530 NA non-coding downstream 71248 3935980 ~ 3936902 (+)
G109532 NA non-coding downstream 79037 3943769 ~ 3943994 (+)
G109541 NA non-coding downstream 111996 3976728 ~ 4035308 (+)
G109571 NA non-coding downstream 291232 4155964 ~ 4156206 (+)
AMCG00006387 NA other upstream 210023 3637743 ~ 3648911 (+)
AMCG00006379 NA other upstream 237138 3570039 ~ 3621796 (+)
AMCG00006385 NA other upstream 246176 3599241 ~ 3612758 (+)
G109362 NA other upstream 352255 3503181 ~ 3506679 (+)
G109309 NA other upstream 493369 3361354 ~ 3365565 (+)
G109538 NA other downstream 98865 3963597 ~ 3963996 (+)
G109570 NA other downstream 288084 4152816 ~ 4155749 (+)
AMCG00006413 NA other downstream 294791 4159523 ~ 4167952 (+)
G109714 NA other downstream 612202 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 660074 4524806 ~ 4527738 (+)

Expression


Co-expression Network