AMCG00006394


Basic Information

Item Value
gene id AMCG00006394
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3825568 ~ 3826749 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006394
ATGGCAGAGAACGACGTTGACAATGAGCTGCTGGACTATGAAGATGACGAGGTGGAGGCGACGGGGGTCACTGGTGACGGGGGGGAGCTGCTTGCCCCCAAGAAGGAGGTGAAGGGCTCCTACGTGTCCATCCACAGCTCTGGCTTCAGGGACTTCCTGCTCAAACCTGAGCTGCTCCGTGCCATCGCCAAGTCCGGTATGGGCAAGACAGCCGTATTTGTGCTGGCCACCCTGCAGCAGCTGGAGCCTGTCACTGGACAGGTGGCGGTGTTCTTCGGCGGTTTGTCCATCAAGAAGGACGAGGAGGTGCTGAAAAAGAACTGCCCTCACGTGGTGGTGGGCACGCCGGGCCGCATCCTGGCGCTGGCCCGCAACAAGAGCCTCAACCTCAAGCACATCAAGCACTTCATCCTGGATGAGTGCGACAAGATGCTGGAGCAGCTGGGTGAGGGAGGCGTGTGA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006394 True 462 mRNA 0.60 3 3825568 3826749

Neighbor

gene id symbol gene type direction distance location
AMCG00006396 NA coding upstream 1499 3823571 ~ 3824069 (+)
AMCG00006392 NA coding upstream 5744 3814613 ~ 3819824 (+)
AMCG00006389 NA coding upstream 61940 3749003 ~ 3763628 (+)
AMCG00006386 NA coding upstream 156637 3653239 ~ 3668931 (+)
AMCG00006384 NA coding upstream 193447 3623947 ~ 3632121 (+)
AMCG00006395 ddx39b,uap56,LOC105012335,LOC104931065,LOC103042292 coding downstream 5512 3832261 ~ 3839998 (+)
AMCG00006404 NA coding downstream 66514 3893263 ~ 3896458 (+)
AMCG00006410 NA coding downstream 93155 3919904 ~ 3920782 (+)
AMCG00006409 NA coding downstream 94485 3921234 ~ 3921928 (+)
AMCG00006408 NA coding downstream 95672 3922421 ~ 3924520 (+)
G109396 NA non-coding upstream 51024 3772549 ~ 3774544 (+)
G109392 NA non-coding upstream 70527 3722519 ~ 3755041 (+)
G109412 NA non-coding upstream 94728 3729887 ~ 3730840 (+)
G109405 NA non-coding upstream 110789 3699108 ~ 3714779 (+)
G109389 NA non-coding upstream 276580 3548614 ~ 3548988 (+)
G109523 LOC100846954 non-coding downstream 83212 3909961 ~ 3911048 (+)
G109530 NA non-coding downstream 109231 3935980 ~ 3936902 (+)
G109532 NA non-coding downstream 117020 3943769 ~ 3943994 (+)
G109541 NA non-coding downstream 149979 3976728 ~ 4035308 (+)
G109571 NA non-coding downstream 329215 4155964 ~ 4156206 (+)
AMCG00006387 NA other upstream 176657 3637743 ~ 3648911 (+)
AMCG00006379 NA other upstream 203772 3570039 ~ 3621796 (+)
AMCG00006385 NA other upstream 212810 3599241 ~ 3612758 (+)
G109362 NA other upstream 318889 3503181 ~ 3506679 (+)
G109309 NA other upstream 460003 3361354 ~ 3365565 (+)
AMCG00006393 ppp1r11,LOC107711309 other downstream 32185 3858934 ~ 3864732 (+)
G109538 NA other downstream 136848 3963597 ~ 3963996 (+)
G109570 NA other downstream 326067 4152816 ~ 4155749 (+)
AMCG00006413 NA other downstream 332774 4159523 ~ 4167952 (+)
G109714 NA other downstream 650185 4476934 ~ 4477570 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G394352 NA non-coding CI01000222 null 283998 ~ 287078 (+)
rainbow trout (Oncorhynchus mykiss) G20678 NA non-coding NC_048565.1 CM023219.2 21382452 ~ 21382704 (-)
rainbow trout (Oncorhynchus mykiss) G1114605 ddx39b non-coding NC_048576.1 CM023230.2 77486442 ~ 77487466 (-)
mexican tetra (Astyanax mexicanus) G327955 NA non-coding NW_019172906.1 APWO02000027.1 11173738 ~ 11174460 (+)