AMCG00006398


Basic Information

Item Value
gene id AMCG00006398
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3730042 ~ 3815517 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006398
ATGCAGTGCCCCCTTCTGGATGAAACGCAGGGAGTCCCCCACCAGGCACACCCCAGCCCTGAGAAGGTGGGTGGCGGCCAGGCTGAGGAAGAATGCCACCCGGAGGACGCAGGTCAACGAGTCGCCCAGCAGGAGAAGAGCCTCCAGGAGCAAGTGTCACCCACCAGTCTGCCACCCCCTCCAGTACGGAAGCTGCTCATCCGCCCTAGAGCCCCAGTCTCTCCAGTGCAGTCAGTGTCTGCTGAGATGGACGGGCTGGACAGCAGGGCGGCtctgctcctcttcctctGGTCTCATGACAATGTGTTCTGGGAAGCCTCTAAATGGTCCAGCCCTCATCTCTCTCCCGTGTGGAAGTCCTCTGCACCGTCTATCAGTCTGCGGATCCAGAATATCACAGAGACAGACCTGGCGCTGTACTACTGCGCGGAGATTGATGGAACAGAGCTGACGTTTGGAAATAGAACCAGGCTCGTCTATGAGGGTCAGAAGGACATCAGTCCCCCTGCCCCCTGTGTGCTGAGCTGGGCGCtgctgggctgtgtgtctgcaggctgCCTCCTGCTCTCCGGCTGTCTCTGCTGCCTCTGGAGCAGGAGAGTGTCGGTGAGAGTCGGGGACTCTGTCACTCTGCGCTGTGATGGATCAGCCTACAGAGGGACTCCTATAGAGCAGACATACATTAAGTGGGAGACGGATGAAATCCCTGTTTATGAGTTTATCTATGGCAATTCCACCCCTGGTCCTGGGTTTGAGAACAGAACTGAGATTCCTCTGGAAAAGATCCAACTGGGGGACTTCTCCCTGATCCTCAACCACACACTGTCCTCTGACCAGAGGTTTTATAGGTGTTCCCATCAGAGAGGAAGTGAACGGGGCAGTTCTCTTGGAAGGGTTAATCTCACTGTTACAgGCCATGAGGAGAGCAGCTCTGTCTCCTATGGGCAGCCCCTGAGCCTCCGTCTGTACAGCAGGGCAGCTGTGACAGTGTGGTTTAACCCTGCGGGCGCTGGAGCCTCTCTCCCAGTGTGTGCTGTAGAGGGCGGCACCGTGACCCCTGACCCTGCCTATGGGCCCCGAGTCTCCGGGCAGGAGCAGGAGGTCACACTGTCTGCACTGACCTTCACTGACCAGGCTCACACTGCAAACCTCACTCTGCTGTCTGGAGCCTTGCTGTCTCTCCCGCTCCTCTCTCCTGGGCCAGTAGAGGTGCTGTTTGCTTCTGCAGGAGAGGGAGCCTCTGTCTCGGTGTGCACTCTGGAGAGGGACACAATGTTCAGTCCTGGCCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGACCTTGCGCTCACTCACAGCAGCTGACCAGGGCCAGTACACAGTGAGGGACCTGCAGGGGGACACAGTCAGCaccgtctctgtgtctctggaaGATGTTGGACTGTCCTCCAGTAATGTGGCTTGTATAGTTGTTGGAGTGCTGCTGTCCGTCTGTGGTGGTTTTGTGCTATGcgtatacattttgaaaaaacgGGATGGCAATGGTGCATACTAAGATGCAGCAGATGCAGCAATCCACCGAAGTTGCGTTGTAATTGGTTCTGAGACTGGCGACATTAGTCAAGACTGCTTTTCCCATAAACGCAATGTTTAAATGGAGAGCGTGGTTCCAGAAAATCTATtttgacaaatataatttctgaaaaatttacaaaatatgaaatctgaCCATGACAATTTAGCCGACTGTGTAATGAAGCTCTGGGCAGTGCtgccagaaataaaaatacacaagtaGCACCAAACCAacccaatatatttatttgagaaACCCAAAGTAAATCCATATGTGGCGTTTCCACCCTCCACTACATTTGTGATTTAAACCCAGTATTTCGTTCTTTCATGTCAATATTTTTGCATTGAAACAATTTACCCATAgttgtattaaaaatagaacttgataaaaccatttaaatccTTTTATGGAAGCTTCTGAAGAGTGAACCAACTTTCTAAATTAGAGCGCAGGTAGGTCTAGGTAGGTAATTCAGTCACCCACTACACTCTTGTGAGGCAAACCAATTGAGCCATGTGTTCACAGatgcatatataatatagatCGATAGGCATTAGCCAGCCCAATGGACTCTCGCTTTGcctaaataaatgtacagtattttttcaatCTGAGGCCAGAGATCAAGAGCACTTGTCAGCAGCCAATGGAGACCAGACCGTGGAAAGCACAGGAGAAATTCAGCCAAGAAGATGTGAACATAAGAGCAAGTATTAGCATAAGGGAAGTATTACCAACTTGTACTTTGCTGTTGTAGATAAGTTCTGAGTATGTTACAAGGATGGGTTTTGCACGGTTATCCCATTATCTTATTCATGCCACCATCAGTAAGCTGATCACAATCTTCTTGCATCCAGATGCAGATGAGGCAAATCCACTACACTACAGAGGGCAGAAGAGGCACATCCACCACCCCCGAAGAGGGCAGACGAGGCACCGGCACATCCACTACCACACTCCAGAGGGCATACAAGGCCATCCCAGAGGGAGACCACAGACCTGTATTGAATTGttgtacatgtttatatatCCAAATGTGAATCACAAAGGCAGACCTAAAGGTTTTCATGGTAATTCCTTTAGCAGTGTAAAATACCTTCAATACTGTCATACAGATCTAATTTTAAAGAGGTACTTGTGTTATCGAAGGCAacagttggaatgaaaacctcaAACTACTGTGGGGAAAACGCTGCACTTGGGCTCAGAGGTGTCCaggcctggtcctggagagccctcAGTCCAGCTTGTGTTATTTTGATGTGACTTTGAACCAGTACTTGAAAAGAGAGACCAGTGTTTTTACAGATCAAGTGAgtcttaattgatcaataaccaTAAAGGTCAATAAAATGTTCCGCGGGCTTTTGAAATAGGAAGTTTAGGGTGACCTGTATAATTTACTCGAATCGGCATTTCCAGCAACTACATCTGAATTCTAGAGAATGCACTGCTCTATTGTTCTCTAGCCACGTATTGAACATACAAAATTAACGGTTTCTTCATTATTGCTAATTTGGGACTACCAAAGTTCACTACAAAGAAATGTATTGGTTGGGGAAAATAGGTTGTATATTGTTTGTAATAAGATTTCCATCTTGTTTTTTCCATTCTAGAAGATTAGGAAACTGAAGCTTTGAACTCTGTCCTTATGTGTTCTTCACCTTAgaacataaatgtataactaaATATGCTAAACTCAAGCCTGTTGTATATAGTTTGTAACTTAATGTTTCCACGTTTAAACCTTAGGCTTGTCTGTTTCATATCCAGTGTTAATTTAGTAATCAGTTTGATTTAGTTGTTTTGATCAGGTCAACTAAAATGTCTGAGATCTAGGgtgcattttcatgttttgaccAACCCACAATTAGCTATTAGTATTAGATCTAGGAGCTATGACTTTATCTACCCTTCTGTAAATTTGAAACTACTTGTATTGTGCTtgaattgtaaatattgtactgtattattgcacttgcGCAATGCTCTGGTATCCTCTAAGTTGCCCTGCAGAAAGGCCTTTgccaacaaatacataatgaacCAACCTGTTGGGTATGTTACTGACTACGGTCAgacattatatatgtaaatcatGCAAAATCTCGATCTCTACAAATAGACATTAGCCTGGATTAGATTGTATACTAAAGGTAGTTTCAAgcaatttaattgtgttttatggcagtaatgttaaaaaaaaaaaaaggtgtacaTACACAATATAATTACCCCATTTCTTAGCACCGACCCTGAGCTAGGGTGACATTGTTACAACCTCTTACAATCTTCCAATCCAGTGTCCAGAGCACTAACCACtattccacactgctgccatttgttatatatatattttttaacatttattagaAGTGATTTAACCTTGCTGCCACCTATGGCAAAACCCCACTCTATCCTACAATGCCTCTCATTACGTGACAATGAATTGAGAGCTGAGTCATGTACTGGATTCACGGGTTCAAATGATTTCTAAATGCTGTGCCCGCTGACcacactgcaaaaacacacaaccatacaacctgatGAACTGGGCATAGCTCGAATACACACCcatagtcacattttagtcatgcaattttctttatttttagtcttcCAAAATTATTCTAAAGTCTTTGTTAGTTTTAGTCTAATTACATTAGTTTTAGTCAAGCTGCTGTAAGACTTGTGGGTATTCTGGGCTACAGCAGGGATTTGAAACCTGTACACCTTACTACAGTAAACTTGCACTGTTGCTGCTTGTATTTT
>TU137060
NNGCCGAGCGGCGGACTGTCAGAGCCGGGGACACCGTCACCCTGGACTGCGACATCACACatcagaaaaaaactatttggtTTGTACAGCGAGACGACGAGGCTCCGTTTCAGCTCATTTCGGCACATAAAATCGCAGGGTCTCATGACAATGTGTTCTGGGAAGCCTCTAAATGGTCCAGCCCTCATCTCTCTCCCGTGTGGAAGTCCTCTGCACCGTCTATCAGTCTGCGGATCCAGAATATCACAGAGACAGACCTGGCGCTGTACTACTGCGCGGAGATTGATGGAACAGAGCTGACGTTTGGAAATAGAACCAGGCTCGTCTATGAGGGTCAGAAGGACATCAGTCCCCCTGCCCCCTGTGTGCTGAGCTGGGCGCtgctgggctgtgtgtctgcaggctgCCTCCTGCTCTCCGGCTGTCTCTGCTGCCTCTGGAGCAGGAGAGGTGGCGATCGGTGTGGAGGGGAGCAGTGCAGAGGAAAAGGAGCAGTGCAGGGGGCAGAGGTGGAGTCAGATTACGCCAACATACAGATTCACACAAGCCACACCTACGCCACAGACAGAACTGTGTATCTTCACCAGATCACAGAGCAGTCAAGggcaaaaataaattgtttttaaactgagGAAAATTACTGTCATGCTTCCACTGGATTGAAAACCACCACAGATGGAGaaccaggtttttttttttgcagtctttATCACAGCACcgtttgtattaattgttatttattggcTACAATCTGTTGTGAAACTGTGTCTTGTAATGTGTCTCTACAGAAGGTGACTGCTGtatttaacatgtttgtttaGGGGTCAAGTGGGTGTGGTCTGAGATTTTTGTGATCGATGTGCCCACTTTGTCGCCTGTGCTCACCGGACGTTTTCTGTGGTTTCCCcattttattctttgttctaTTCTGGTTAGTTGTTTCTCAACAAGTTTCCTATGCTATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006398 True 4341 mRNA 0.45 8 3783642 3815517
TU137060 False 966 lncRNA 0.49 4 3730042 3800123

Neighbor

gene id symbol gene type direction distance location
AMCG00006388 NA coding downstream 51625 3674830 ~ 3678417 (-)
AMCG00006382 NA coding downstream 164625 3564229 ~ 3565417 (-)
AMCG00006381 gtf2h4 coding downstream 206023 3515708 ~ 3524019 (-)
AMCG00006380 NA coding downstream 214834 3506311 ~ 3515208 (-)
AMCG00006377 LOC103388862,LOC106582320,LOC103356805 coding downstream 250534 3475991 ~ 3479508 (-)
AMCG00006399 NA coding upstream 7398 3822915 ~ 3823973 (-)
AMCG00006397 NA coding upstream 23531 3839048 ~ 3847723 (-)
AMCG00006400 NA coding upstream 32847 3848364 ~ 3858917 (-)
AMCG00006402 NA coding upstream 58433 3873950 ~ 3878042 (-)
AMCG00006407 NA coding upstream 224977 4040494 ~ 4043227 (-)
G109439 NA non-coding downstream 74919 3586596 ~ 3655123 (-)
G109432 NA non-coding downstream 168098 3548614 ~ 3561944 (-)
G109322 LOC103376870 non-coding downstream 296772 3340118 ~ 3433270 (-)
G109334 NA non-coding downstream 360494 3367197 ~ 3369548 (-)
G109294 NA non-coding downstream 442813 3286270 ~ 3287229 (-)
G109483 NA non-coding upstream 10993 3826510 ~ 3834423 (-)
G109514 NA non-coding upstream 51203 3866720 ~ 3867041 (-)
G109540 NA non-coding upstream 160686 3976203 ~ 3976617 (-)
G109609 NA non-coding upstream 161192 3976709 ~ 4035331 (-)
G109619 NA non-coding upstream 266290 4081807 ~ 4083452 (-)
AMCG00006390 NA other downstream 1523 3698885 ~ 3728519 (-)
AMCG00006354 NA other downstream 835508 2888486 ~ 2894534 (-)
AMCG00006344 NA other downstream 1143196 2581337 ~ 2586846 (-)
AMCG00006328 NA other downstream 1400051 2324131 ~ 2329991 (-)
G108938 NA other downstream 1599787 2097818 ~ 2130255 (-)
AMCG00006414 NA other upstream 337299 4152816 ~ 4158123 (-)
G109633 NA other upstream 349417 4164934 ~ 4165600 (-)
AMCG00006415 NA other upstream 352533 4168050 ~ 4177052 (-)
AMCG00006429 NA other upstream 454899 4270416 ~ 4277155 (-)
AMCG00006476 NA other upstream 1761953 5577470 ~ 5603733 (-)

Expression


Co-expression Network