AMCG00006399


Basic Information

Item Value
gene id AMCG00006399
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3822915 ~ 3823973 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006399
ATGTCTTGCTTCCACGGGGACCCAAATTTCTGCCCCGAGTGCGGCACCGTGCTCCCGATTCCCGGCATGGAGGACACGGTCACCTGTCGCCGCTGCTCCTACAACATCAGCGTGACGGAGTTTGCAGATGTCACCATCACGTCCTCGGTGGTCTTCAACAGCCTGGAGGGATCGTCCACCACCATGGAGGCCGAGGAGGGAGGAGAGCTGAAGGGCCCTGTGATTGACAGGAAGTGCTCTCGCTGTGGGCAGGAGGGCATGGTGTATCATACCCGGCAGATGAGGTCTGCGGATGAGGGACAGACAGTCTTCTACACCTGTATGCACTGCAGgtaCCAGGAGAAAGAGGATTCCtga

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03000 RPA12, ZNRD1; DNA-directed RNA polymerase I subunit RPA12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006399 True 357 mRNA 0.59 4 3822915 3823973

Neighbor

gene id symbol gene type direction distance location
AMCG00006401 NA coding downstream 44411 3776066 ~ 3778504 (-)
AMCG00006391 NA coding downstream 80634 3735291 ~ 3742281 (-)
AMCG00006388 NA coding downstream 144498 3674830 ~ 3678417 (-)
AMCG00006382 NA coding downstream 257498 3564229 ~ 3565417 (-)
AMCG00006381 gtf2h4 coding downstream 298896 3515708 ~ 3524019 (-)
AMCG00006397 NA coding upstream 15075 3839048 ~ 3847723 (-)
AMCG00006400 NA coding upstream 24391 3848364 ~ 3858917 (-)
AMCG00006402 NA coding upstream 49977 3873950 ~ 3878042 (-)
AMCG00006407 NA coding upstream 216521 4040494 ~ 4043227 (-)
AMCG00006406 NA coding upstream 226253 4050226 ~ 4056245 (-)
G109472 NA non-coding downstream 15128 3805656 ~ 3807787 (-)
G109439 NA non-coding downstream 167792 3586596 ~ 3655123 (-)
G109432 NA non-coding downstream 260971 3548614 ~ 3561944 (-)
G109322 LOC103376870 non-coding downstream 389645 3340118 ~ 3433270 (-)
G109334 NA non-coding downstream 453367 3367197 ~ 3369548 (-)
G109483 NA non-coding upstream 2537 3826510 ~ 3834423 (-)
G109514 NA non-coding upstream 42747 3866720 ~ 3867041 (-)
G109540 NA non-coding upstream 152230 3976203 ~ 3976617 (-)
G109609 NA non-coding upstream 152736 3976709 ~ 4035331 (-)
G109619 NA non-coding upstream 257834 4081807 ~ 4083452 (-)
AMCG00006398 NA other downstream 7398 3730042 ~ 3815517 (-)
AMCG00006390 NA other downstream 94396 3698885 ~ 3728519 (-)
AMCG00006354 NA other downstream 928381 2888486 ~ 2894534 (-)
AMCG00006344 NA other downstream 1236069 2581337 ~ 2586846 (-)
AMCG00006328 NA other downstream 1492924 2324131 ~ 2329991 (-)
AMCG00006414 NA other upstream 328843 4152816 ~ 4158123 (-)
G109633 NA other upstream 340961 4164934 ~ 4165600 (-)
AMCG00006415 NA other upstream 344077 4168050 ~ 4177052 (-)
AMCG00006429 NA other upstream 446443 4270416 ~ 4277155 (-)
AMCG00006476 NA other upstream 1753497 5577470 ~ 5603733 (-)

Expression


Co-expression Network