AMCG00006400


Basic Information

Item Value
gene id AMCG00006400
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3848364 ~ 3858917 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006400
GTCTCTGACACTCACGCTGCACTTGTTTCTGGTTGACAAGCGTGCCGTGCGTGAGGTTAAAGGTTGAAAGGAAGATGGCGGCGCCCTGTATGCCTTCCTGATTGTGTGCAGCGGAGTAGAACACAGCTATGTGGCGCCCAGTTTGCTGTGCCCCAGTGGGAGTGGGCAGACTGGGGCTGCTGCGGGACCTGTGGGGGGCCCGTGGGGGTGTCTGCAGACTCTGTAGCAAAGATTCTGGgaccaccccccctccccctccccctccccctccttcacTGAGACACCGTgctgagaaagagaggagacggagagagaaggagagagccATCCTGACACACTGCGGCACTGAcactAGCCGGCTCCCTCAGGCTGTGGAGCACACCTTCTCCCTGTGTATCCCTCCACCCAATGTGACCGGATCGCTCCACCTTGGCCACGCCCTCACCGTGGCCATAGAAGATGCACTGACCCGCTGGCGGAGGATGCAGGGCTATCGGGTGCTGTGGGTTCCAGGCTGTGACCACGCTGGCATCGCAACCCAGgcagtgGTGGAGAGGAGGCTGCTCAGAGAGAGGGGGTTACGCAGACAAGATCTTAGCAGACAGCAGTTCCTGGAAGAAGTGTGGGACTGGAAGAAAGAGAAGGGAGACGAGATCTATCTGCAGCTGAGGAGACTCGGGGCCTCTCTGGACTGGAGCCGGGCCTGCTTCACCATGGACCCGGGGTTCAGTGCTGCAGTGTCCGAGGCGTTTGTGCGTCTGTTTGAGGCTGGACTGATCTACCGCAGCGAGCGGCTGGTCAACTGGTCCTGCGCCCTTACCTCCGCCATCTCCGACATCGAGGTGGACAGTGTGCAGCTCAGCGGCAGGACTCTGCTGTCTGTCCCCGGGTACGAGGACAAGGTGGAGTTTGGGACCATGGTGACATTCGCCTACCCCTTAGAGGGACAGGATGGAGAGATTGCAGTGTCTACCACTCGTCCAGAGACGATGCTGGGTGACGTGGCGATCGTTGTTCACCCCGATGATCCCCGCTACCAGtctctccaGGGCAGTGTGTGTTGTCACCCCTTCACTGGCCGTCTGCTGCCCATCCTGACTGACCCCATAGTGGACACACAGCTGGGCACTGgggcaGTAAAAGTCACTCCCGCTCACGATCACACAGACTTCCAGCTGTCCCTGCGACACGCCCTCCCACGGCTCTCTGTGATTGGAGGAGATGGCACCATGAACGAGCTGTGCGGCAAATGGCTACAGGGTGTGCGGCGGTTCGAGGCGAGGGGGAAGGTGCTGTCTGCGCTGAAGGAGAGGGGGCTCTATAGAGGCACGGTGGAGCACCCCATGACCCTGCCAATCTGCAgtcgTTCAGGGGACGTGGTGGAGCCCCTGTTAAGGAGTCAGTGGTTTGTGCGCTGTGAGGCGATGGCACAGAGAGCCATGCagGAAGGCAGCGATGCATTGTGGGTGTGCGGGCGGAGCTCAGACGAGGCCAGGAAGAAGGCCGCACAGAAATATGGGGTATCCAGATGTGCTGGACACCTGGTTCTCATCTGCTTTGTTTCCATTCGCTATGTTGGGCTGGCCAGAccagATCTGCAGAGGTTCTATCCCAACAGCCTCCTGGAGACAGGAAGTGACCTCATCTTCTTCTGGGTCGCACGGATGgtggTCCTCCACTCCATGGTGAGGGATGCTCATGGCCGGAAGATGAGCAAGTCTCTAGGAAATGTTCTCAGCACGCGTCACTTCTGTAACAAAATCTGGAATGCCGTCAAGTTCACACTGGGAGCACTGGGAGAAGACTTCACCCCCCTTCCGCTGACCAAGgtcagtGTGCAGGGCGGTGTGGACAGGTGGCAGTGCAGCAGACTATACAGCACGGTGCTGCAGTGTGACCAGGGCTTCCAGCAGTTTGAACTGCATGCTGTCACTGCGGCCGAGTGCGTTAAGCCGGTGCTGTCCGGGGATGGCAGTGCCAGGGAGGCGGCCCGCCAGGTGCTGTACCACAGTGTGCGGCAGGGCCTGGCCCTCCTGTCCCCCTTCATGCCCTACCTGATGTGGGTGCAATGTTCGGGCCCTCAGCAGGCGGCAGCGCTGGAGCACTTCCTGTCCGCAGTGCAGACTCTCTCGCGTGTCGGGGCGCTGCGTCTCCTCTTGCCAGCGGGGGGCGACCCTTCCCCCCCTTCAGGCTGTGCTGTGGGAGTGGTCAACGACAGCTGTCAGATACACATGCGTATCCAGggcagtGTTGATGTCCAGCGGCAGTGCGCGACACTGTCTCAGCGCAGGAACAAGCTGGCCTCTCAGCTGGAGGAGGCCGTGTCTCGAACCCAGGCTCCAGAGTACCAGGAGAAAGTGCCTGAGAGAGTGAGACTGGAGCACACGCACAGGATCGCTTCTCTACGCTTGGAACTGCAGCACACAGAGGAGCAGCTTTCGACATTACAGCACCTAAAGACAGAGGACCGATAAAGATTGTTTGAGAGTGTATTTCAATACTCAGGGGGTGTTCTGCCTGGCTGCAGTCCCCACCTCTGAACACACAGAGGCGCCGATTTCCCACAAGAGAGGCGAGCTGGCCAGGAAGAGGCGAACGAGACACACAGTCTTCAGTCCCGCTGCGTGAGGGCGACAGCCACGGAAACAAACCTGGACATGAAACAAAACTTTTACTACAACTACTGCTGTAAAGTCTAAAAAGCTGGTGATCAACTCTTCTGAGGACACGCGTGggaaaataaagtacaaattatGTCAACCCAGAACAAAAATCATGAGCTATATgtgacacttaaaaaaaataaaatctaaggGCATCTGGGGTGGCTGTCT

Function

GO:

id name namespace
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006400 True 2834 mRNA 0.58 23 3848364 3858917

Neighbor

gene id symbol gene type direction distance location
AMCG00006397 NA coding downstream 641 3839048 ~ 3847723 (-)
AMCG00006399 NA coding downstream 24391 3822915 ~ 3823973 (-)
AMCG00006401 NA coding downstream 69860 3776066 ~ 3778504 (-)
AMCG00006391 NA coding downstream 106083 3735291 ~ 3742281 (-)
AMCG00006388 NA coding downstream 169947 3674830 ~ 3678417 (-)
AMCG00006402 NA coding upstream 15033 3873950 ~ 3878042 (-)
AMCG00006407 NA coding upstream 181577 4040494 ~ 4043227 (-)
AMCG00006406 NA coding upstream 191309 4050226 ~ 4056245 (-)
AMCG00006405 NA coding upstream 199841 4058758 ~ 4066143 (-)
AMCG00006419 NA coding upstream 230383 4089300 ~ 4090132 (-)
G109483 NA non-coding downstream 13941 3826510 ~ 3834423 (-)
G109472 NA non-coding downstream 40577 3805656 ~ 3807787 (-)
G109439 NA non-coding downstream 193241 3586596 ~ 3655123 (-)
G109432 NA non-coding downstream 286420 3548614 ~ 3561944 (-)
G109334 NA non-coding downstream 478816 3367197 ~ 3369548 (-)
G109514 NA non-coding upstream 7803 3866720 ~ 3867041 (-)
G109540 NA non-coding upstream 117286 3976203 ~ 3976617 (-)
G109609 NA non-coding upstream 117792 3976709 ~ 4035331 (-)
G109619 NA non-coding upstream 222890 4081807 ~ 4083452 (-)
G109628 NA non-coding upstream 280117 4139034 ~ 4139269 (-)
AMCG00006398 NA other downstream 32847 3730042 ~ 3815517 (-)
AMCG00006390 NA other downstream 119845 3698885 ~ 3728519 (-)
AMCG00006354 NA other downstream 953830 2888486 ~ 2894534 (-)
AMCG00006344 NA other downstream 1261518 2581337 ~ 2586846 (-)
AMCG00006328 NA other downstream 1518373 2324131 ~ 2329991 (-)
AMCG00006414 NA other upstream 293899 4152816 ~ 4158123 (-)
G109633 NA other upstream 306017 4164934 ~ 4165600 (-)
AMCG00006415 NA other upstream 309133 4168050 ~ 4177052 (-)
AMCG00006429 NA other upstream 411499 4270416 ~ 4277155 (-)
AMCG00006476 NA other upstream 1718553 5577470 ~ 5603733 (-)

Expression


Co-expression Network