AMCG00006401


Basic Information

Item Value
gene id AMCG00006401
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3776066 ~ 3778504 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006401
ATGAGCGCACTGACAGTGCACGAGTTGTCGCCCAAGAGAGAAGAAACGCAAATCTGCGCAACCTTGTATCAACTGACCGTCTCCTCAGATCCTGTCTCAGTGTCAGTGAGATCTGGGGACTCTGTCACTCTGCCCTGTGATGGATCAGCCTACAGGGGGACTCCTGAAGACCAGATCTACATTAAGTGGCAGACAGTGAACCAGAGAGTCTATGAGTTTGTCTATGGAAAGTCCTACCCCGGCCCTGGGTTCGAGGACAGAGCCGAGATTCCCATGGAAAGGATCAGACAAGGAGACTTCTCCCTGACTGTCGACAACACCTCCTCCTCTGATGGAGAGATATACGAGTGTTTCTGTGAGAGGAAGGGGAGCCAGCTACAGTTCCTTGGCAATGTTCGCCTCACCATTGCAGGCCGTGAGGAGAGCAGCTCTGTCTCCTATGGGCAGCCCCTGAGCCTCCGTCTGTACAGCAGGGCATCTGTGACAGTGCGGTTTAACCCTGCGGGCGCTGGAGCCTCTCTCCCAATTGCGGCACCGTGA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006401 True 540 mRNA 0.55 4 3776066 3778504

Neighbor

gene id symbol gene type direction distance location
AMCG00006391 NA coding downstream 33785 3735291 ~ 3742281 (-)
AMCG00006388 NA coding downstream 97649 3674830 ~ 3678417 (-)
AMCG00006382 NA coding downstream 210649 3564229 ~ 3565417 (-)
AMCG00006381 gtf2h4 coding downstream 252047 3515708 ~ 3524019 (-)
AMCG00006380 NA coding downstream 260858 3506311 ~ 3515208 (-)
AMCG00006399 NA coding upstream 44411 3822915 ~ 3823973 (-)
AMCG00006397 NA coding upstream 60544 3839048 ~ 3847723 (-)
AMCG00006400 NA coding upstream 69860 3848364 ~ 3858917 (-)
AMCG00006402 NA coding upstream 95446 3873950 ~ 3878042 (-)
AMCG00006407 NA coding upstream 261990 4040494 ~ 4043227 (-)
G109439 NA non-coding downstream 120943 3586596 ~ 3655123 (-)
G109432 NA non-coding downstream 214122 3548614 ~ 3561944 (-)
G109322 LOC103376870 non-coding downstream 342796 3340118 ~ 3433270 (-)
G109334 NA non-coding downstream 406518 3367197 ~ 3369548 (-)
G109294 NA non-coding downstream 488837 3286270 ~ 3287229 (-)
G109472 NA non-coding upstream 27152 3805656 ~ 3807787 (-)
G109483 NA non-coding upstream 48006 3826510 ~ 3834423 (-)
G109514 NA non-coding upstream 88216 3866720 ~ 3867041 (-)
G109540 NA non-coding upstream 197699 3976203 ~ 3976617 (-)
G109609 NA non-coding upstream 198205 3976709 ~ 4035331 (-)
AMCG00006390 NA other downstream 47547 3698885 ~ 3728519 (-)
AMCG00006354 NA other downstream 881532 2888486 ~ 2894534 (-)
AMCG00006344 NA other downstream 1189220 2581337 ~ 2586846 (-)
AMCG00006328 NA other downstream 1446075 2324131 ~ 2329991 (-)
G108938 NA other downstream 1645811 2097818 ~ 2130255 (-)
AMCG00006414 NA other upstream 374312 4152816 ~ 4158123 (-)
G109633 NA other upstream 386430 4164934 ~ 4165600 (-)
AMCG00006415 NA other upstream 389546 4168050 ~ 4177052 (-)
AMCG00006429 NA other upstream 491912 4270416 ~ 4277155 (-)
AMCG00006476 NA other upstream 1798966 5577470 ~ 5603733 (-)

Expression


Co-expression Network