AMCG00006405


Basic Information

Item Value
gene id AMCG00006405
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4058758 ~ 4066143 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006405
atggagagggagagagagtgtgatggGAAAACTGGCAAGGAGACCCATGGCTGTCCTGGCCGTTCAAAAGTAGCACAAGAAATCATGCAAAAACCACTGGCGTTTTATCATGCTCTGTCTGATAAGGTTTCCGACAAAGAGGTGTTGAGAACTGCATCAGGGGGGTTGGCTCTACAGGGAATCTACTACACAGGGCATCTGGTGGACATGCTGGAGAGCAGGGAGCAGCTCATTGAGGTACCTGAGTCTTTCTCACTGGGGGATCCAGAGCAAAACTCCACCTTCAGGCAAAAGGAGTTTCTGTCCTGCTCTTCCCAGACTGCCTTCCAGGCTCTCGTGGAGAAGGTGGGTTTCAGCTTGAGCTGCCCCTCCGATGGGGGTGCAGAAGCTGGGGAACAGGTGGACACCACTGAAGATCACAGCTCTTCAGAACTCAGGGAAATGTTGAAGTCAGTATCTGCACAGACCAGCGTGTGGGTGACGAAGTACCATTACGTACCGCAGGCCACCAGCTCCATTGAAAAGCTGCAACTCAGGCTGTCCCACAGTGCTTTACAAGAGCTTCAGGTGACTGAGAGTCTTTTGTCCAACAGGAGGGATACCCCTGCCATCTTGACCAACAGAGTGAAAGTTTTTTTTGAGAGGTTTGGTTCGCATGTTAACCAGGGTCCTCTGCACTTTGGAGGGGTGTTCTGGTGGAAAGCTTCTGCTGAGGGCTTCCAGAGCACAAAGCTCACAGAGATGAGGAGTCTGATTACTGAAGCCTTGGACACCTATATTGGTGCTGACATTGAAAAAGCCTTGATGCAGCTGAACCGACAACTTACTAAAATTGACAACAACTCTCTCATTAAAGTGAAGATCTCTGCCAGTCACACTGGAGGTCCAGCCAACATGGAGAGTCACCTGCAGTGGAAGTCCCTTCTTGTTTCCAGTCGCAGAACTTGGAGTCTCACTGACAGAGGATCATCTCTGATACCTGTGTGGGACATAGTTCTGTCTAATCACAGGAGGGACTTTAAAGATGCTAGGCAGGAAGAAACAGCAGGAGAGCTTCGGGAGAGGATTCTGGTGGCGACATTCTGTGAGCGGGACCAGTCCAGCTGTGTGGCACACCTAACCTCACTGCTGGATATAAAGAGCAGACTGTACAGGGACACTGGGAATCACCACATATGGTTTAACACATACTTTTTGGACTGCAGCCTTCAAAGCTGCCTTGTGAAAACCATGGAAGAATGCATGTACTGTTCAGGGGAGGAGTCCAACGAAATCAAAAAGCTGATACGCAGACTTCTGGAGCCTGATCCATTTGCTGCAGTTGACTTTCCCAAAATGCTCTGTGTGATCAGGTGGGCCTATGCCTCGGAGAGAAACATGCGGGGGAATGTCTTTGCTCAAGATGTTCCTGAGCTGATCACAATTCTGAGAAAGGAAAAGGAACGCATAAAATCATCTGCTTCTGAGACTGAGCAGGAGACACAGATTGAAGCCACTGCTCTGATCacactgtcaatcaatcatctTCGTCAGATGCTGAGAATGAAACAACAGTATGAGGCTGAGATTCTTATGCTCTCAGTTGTGAGTGCTACCGGATACAGAATCAAAGGAAACATGTTCAGTCATCTATTAAGCTGGAAAGATATTGATTTCATGGAGAAACAGATGCTTCAATCCTATGAGAGATACTGCAATTTGAACCAACAAAGTGTGTCCAAAGCACAAGCCTACACTTTAGTGCAGACCTTGACAACAGCCAAAGACAGTGGCCCTGTTTCCTCTGAAGATAAACAGAAAcgtttagatttatttaaaatgtgcacagGAGACAGCATTTCAAGTGAAATCTCTGCAATACTGGGATGCTGTCAAAAGATATCGATAGACTGGGAAACTGCTGAGAAAGAATTAAAATCAGTGTATGAGAAGTGTGAACCTGTTAAGGAACACTTTGAGAAGTCCGTGTCTCATATTAATCTAGAAAATGTACAAGAACACCAGTTTGCCTCTGTTCCAGACACTAATTCTATGGTTGAAGTAGAGAACAACATTTCAAGTGAAATTACTGCAATACTGGAAAGCTGTAAAAAGTCATTGACAGACTGGGGAACTGTGGAAGAAGAATTAAAATCAGTGTATCAGAAGTGTGAACCTGTTAAGGAATGCCTTGAGTCATCCTTGTCCCATAATAATCTAGAAAATGAGCAAAAACACCAGTTTGTCCCTGTTCCAGCAACTGACTCTTTGGGTGAAGGGGAAAAACTCACCAAGCCAATTAAAACTGGTGAAGGTACTGGAACCAAAGTGAGGAAAACGGTGGAAAGATTAACAGGACCCACTCCGCTTATAAGGACAAGATTTGAAACCATCAGATCCCAGACTTTCAAGAATCTGCTTGTCAGACTGGGTCTCCTAAAATATTATCCCcaaaaattgagaaaaacaGACATTCTTGTAATTGATAAGCTGTCGTTGCAGATGAATCATCCCATCACAGAGGAAGAGCTTCCCTTTCATTACCTGTACAAACTTATGATGCTGGACTACAGGGCGAGGACCGTAGTTTGGAAAGAAGACAGGAAAACAACACATGTAGAAGAGCAGGGCCCCTCAGCTGGGGCTGGTGATGTAGACAGTGAAGATGAAGACTTTTTCAGTAATGAGACCAGACAGACCTGTGAGGAGACTGAAGACCAGCTGACACACATTCACCCCATGGATATCCACATGGCTGTGTTCCACTGCGCAGATGACTTTCTGAGGCAGTACCTCCTTCTTAAATATACAACCTGTCAGTATGCCTTGCCTCTGTTAATACCCCAACCATGCAGTGATACAATTGAATTTCCTCTCTGGGCTCTTAGGCAGGTGAAGAAGACCTGGGGCTGTAAAGATCTCTCGGAGAAGGACGGCTTCATCAAATGCAAGAACAGCCATGTGTTCAACACCAGTGTGCCAACAGTGTCCTTCTTAAGGCTGGGAAACTGTTCAGCCTCCAAATCCCAGATCCTGAATAGTGTCATTAGCAAGCAGAAGCACAACATCTTCTTCCACCGTCACTGCAGAggcagcactgcacactgccTGCTCATGGACGGTGTTGTGGAGATTGCCTGGTATTGTCCTGGAGGCAAGGAGGATGACATCTTTGATAATTGCTTGTCCTTCACCAATCTTCATGGTGATGCTAGCCAACTCCCAGCACAGGTTGAGTTTCTGCAGGAGGTCAGTGCTGTCAGTGTGGTTCTGATTTCAGGGTCTCTAAATGAAGCTGCCAGGAAGACCTCAGAGGCTCTATTGAAGTCACCTGCTCCAGTGATCTTCCTCTTTGATGACAACAGCATAGTCAGCCGTGGGAAAAACCCAAACAAGGTGAAACTGGCAGTCAGAAACAAGAATGAAGCTGAATTGGTTGATAGAATAATTTCCAACATCAAGTGCTTTGTCACAGAACAGTCTAACACTTCCAGTCTCAGTGAATTCCTATCTACGGCACGGAGACTTAGGTTTGACATagatgaaaacaatgaaaaatgcatggAAGGCAATGCGATAGCCAGTGCTGTACTCCGTTGGATAAAGGAGGAGAATCTGACAGCCGTGAAGGAAAGACTTTTGCCTTTGCAGGGCAAGCTTTGGTATGACTGGTGCACCAAAAACAAGGAGCAGTACAGACTGAAGGGCAATGCGAGCAAGAGCATTGAGCAGCAGctgtgtgaaattaaaaaagagaaaaaggtgATCCGGAGTGAACAGTTGAAGAAAGCTTTCCCTCTTAACGGTCTCATGAGATCTTTCCTGGAGTGTTTGGGCTCCTCATCGCTTTCCAGGGACACTAAAATGTTCATGCTACAGTGGCTAAGGACTTATCTGGATGATTTGACCACAGAAACCCTGTTGAAACTGGAGGAAAAATATCACACACAATGGACCGGGAtgagaaagaacaaaaacaccatAAAGAGAGGTGTTGAATTCAGACTGCAGAAAGAGTTAGATCTAATATCTGAGGAGCTCAATGCAGCCACTTTAGGGATTCAACATTTTTTTAGGGAAATGGGGCAGATCTATGAAGCGCAGCTGGACAATCGAGAGAGAATACCAAAGACCCAAGACTATGTTCACTGTCTTCCGGACATAGGAGCTGAAATGCTGATCTCAGGATACCCTCTGGAGCTTATGGATGGAGATGCTGCCCATGTGCCCCTGGAGTGGATCGGAGCTAATGTAGCAGAAACGTCTGCTGGGGAGAAGAACATGGAAGGCAGGAGGCGACTGCAGGAGAGACTGGACGAAATGACTCAGATCGCCGCGAAAGAGGAGCACTGTGATGTGGCTGCCTTCAGTGACATAATCCATTTTGATGTCGAATCTCAGGTGTTCTACTTCAAGAATCTTCTAGAGGGAGACCCTCCAATGGCTCCTCCGAACCCCTCCTACAGCCAGAACGTCCAGGAACTAAAGACCAAGATGCTCTCCATTGCAAAGTGGCGTCCAAACTGTAGGTTTTCTACACTGACTGAGTTTAAGTCCAGAACAGAGGACTTGTGGAACTCACTGTTGGGCGAAAACTTTGTGTTTAGCTTCAAGAACACCTTGGAGATGGTGGTGTACAGCAATTTAGAAAAGGCTTATGGAACATGGACTTGGCAGTTGAGAAAATGTGCCATAGAAGTTCAAAACAGACTGCGCAACCAAATcatgaataatataatacaggACATCCGTGCGTTAAACCACATGCAAGCATTTGATGAGACGTACCGCAAAATTACCACTGAAATAGAGAAGTATTTCAGTGAGGAGAAGCACTCCGGATTACTGATCCAATGGAGGGCCAATACAGAGAAGAGGCTGGAAATGGTGAAACATGACCTCACTATGGAAACTCATGACATGTGTGTGGAGCTCATCAGATTCAAGAAAAGTCAGTTTGAGTTGGACCAGAAGAAATCCAAATATGAGGCTCAGCTGCTCACTAGGAGTAAAGCTCTGGCAACTGAACTAAAAGGGAAGGCATCTAATAAAATGGACATTAAAAAGGCTTTCCAGAAACTGTGGGTAGAATGGAGTGATGAAATTTCTGCTTTGCATGTGCCAAAGAATGAGGAAGATATAGAAGCTGTAGTGGACACCATCCTCCTTGATTGTTTCAAAAAGCACGTGGATCTAATCGCTAAAGTGATGAAAAAAAGCGAAAGATTCTTGTTTaatgaaaagacacacatttcgaaacaatcaaaaattgttttattaacgCAAAGATTCACTTACAAAGATCGAGTGTCTGTAGATGAGCTAACAGAGGACATCACACAAACCGTGAACACTTATATCGAGcgaaagaaagaggaaaagctTGACTTCAGTCAGAGTTACATCTACGGAATGTTGGATGAGATCAAGGAGCACATTGATGAGTTTGGACAATCTGTGAAGCACTTCAGGATCACAGATGACTACAGAGTGGAACTTTCCATCTACCTCTGTAGATCATCTATGGAGAAGTTCAAGGACATGCGTAAGGCATTCAGGAAAGCGAATGATCCCCTGGCCTACCTATTTAGCAAAAGATCTGAGTATGTCAAGATGTTTGAAAGTTTCTGTCAAGGAATTACATCCACCACATTCTTTGCAGACTTTCTGTGCACTAAGCTGAAACCAGCCATCCAGCAGGCAGTGTATGATAAGGCCAGCATCAGGATCACAGAGGAGATGAGGTCAAACTACCCAGCTTTCAGTGGCAACAGATCCAACCTGGAGAATCACATCCTGAGACACCTTGCTGAGGTGGGCAACTTTAACTCCTACATGGAATACATTAACCATCCAAAGCGTTATTTTGTAAGATTTATTAGGCAGCACGTGGCAAAGTACTGCAAACGTGGAGATAGTCTTGTGAGGTTACTGAAGGAAAGCCTTGAGTCTTTAATTAAGACCGTCTGCTCCACCAGCAATGAAGTAACTGCCGTGGTACAAGTGAATCAAGGCAATGCCTCGATGTGGCTGAATAAATTTTGTGCAGACATCGGGGGACACATAGTTCTGTCAAGAGACGACCTAAGAAGCATTGAGGCCGAAGACATCAGCGACCTGCATTTcttcaaaaacacaatgcagGAGAACCTGGCAGTTATGGCACATGAACTGAAAGAAGgtttcaaagacaaaacaacagATCGGTCACAATTCCGCAAGAAACCGGATGACATCCTGACTCAGCAGCTCAGTGGGTGCTGGGAGCAATGCCCCTTCTGCAAAGCCATCTGCACCAACACCATCCCCGGCCATGACACTGATCACAGCATCCAGTTCCATCGGCCCATGGCTCTTGCTAGATGGTATTATCACAATACTGAGCATATTTGTATCGAGTTCTGCACCACATCAGTCAGTAGTGACCGGTCATTCTATCCTCACCATGGTGATGTTAGAACTGTTCCTTGGAAAAAGTACAAAGAAGCCGGTCCACCCTACAGCACATGGAGCATCACTCCAGACCACTCTGAGAAGCTGTACTGGAAATGGATCATCTGCACATGgcaggaggagatggagaagaaAACTGGAAAGAAGTTTACAGGCCCGGGGGAAATCCCAGAGAGCTGGAAAACCATCACAAAGCAAGCCGTGCTGCAGGAGCTGCAATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006405 True 6654 mRNA 0.46 3 4058758 4066143

Neighbor

gene id symbol gene type direction distance location
AMCG00006406 NA coding downstream 2513 4050226 ~ 4056245 (-)
AMCG00006407 NA coding downstream 15531 4040494 ~ 4043227 (-)
AMCG00006402 NA coding downstream 180716 3873950 ~ 3878042 (-)
AMCG00006400 NA coding downstream 199841 3848364 ~ 3858917 (-)
AMCG00006397 NA coding downstream 211035 3839048 ~ 3847723 (-)
AMCG00006419 NA coding upstream 23157 4089300 ~ 4090132 (-)
AMCG00006416 LOC104947235,LOC104953484 coding upstream 33304 4099447 ~ 4108705 (-)
AMCG00006417 vars2,vars,LOC107379499 coding upstream 43832 4109975 ~ 4123637 (-)
AMCG00006418 NA coding upstream 59669 4125812 ~ 4130857 (-)
AMCG00006422 NA coding upstream 65825 4131968 ~ 4132747 (-)
G109609 NA non-coding downstream 23427 3976709 ~ 4035331 (-)
G109540 NA non-coding downstream 82141 3976203 ~ 3976617 (-)
G109514 NA non-coding downstream 191717 3866720 ~ 3867041 (-)
G109483 NA non-coding downstream 224335 3826510 ~ 3834423 (-)
G109472 NA non-coding downstream 250971 3805656 ~ 3807787 (-)
G109619 NA non-coding upstream 15664 4081807 ~ 4083452 (-)
G109628 NA non-coding upstream 72891 4139034 ~ 4139269 (-)
G109632 NA non-coding upstream 97839 4163982 ~ 4164557 (-)
G109634 NA non-coding upstream 100185 4166328 ~ 4166589 (-)
G109635 NA non-coding upstream 100808 4166951 ~ 4167239 (-)
AMCG00006398 NA other downstream 243241 3730042 ~ 3815517 (-)
AMCG00006390 NA other downstream 330239 3698885 ~ 3728519 (-)
AMCG00006354 NA other downstream 1164224 2888486 ~ 2894534 (-)
AMCG00006344 NA other downstream 1471912 2581337 ~ 2586846 (-)
AMCG00006328 NA other downstream 1728767 2324131 ~ 2329991 (-)
AMCG00006414 NA other upstream 86673 4152816 ~ 4158123 (-)
G109633 NA other upstream 98791 4164934 ~ 4165600 (-)
AMCG00006415 NA other upstream 101907 4168050 ~ 4177052 (-)
AMCG00006429 NA other upstream 204273 4270416 ~ 4277155 (-)
AMCG00006476 NA other upstream 1511327 5577470 ~ 5603733 (-)

Expression


Co-expression Network