AMCG00006411 (LOC108414231,LOC106024139,LOC101061046,LOC101068669,LOC105419728,LOC105419724,LOC105419151,LOC105416979,LOC107747774,LOC105419136)


Basic Information

Item Value
gene id AMCG00006411
gene name LOC108414231,LOC106024139,LOC101061046,LOC101068669,LOC105419728,LOC105419724,LOC105419151,LOC105416979,LOC107747774,LOC105419136
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4091688 ~ 4099718 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006411
ATGGCAGAAACCGCTCCAGCCCCCGCCGCCGCGCCGGCCAAGGCACCCAGGAAGAAGGCCGCCCCGAAGCCCAAGAAGACCGGACCCAGCGTGGCCGACCTCATCGTGAAGGCCGTGAGCGCCTCCAAGGAGAGGAGCGGCGTGTCCCTGGCCGCGCTGAAGAAGTCCCTCAACGCGGACGGCTACGATGTGGAGAAGAACAAGGCCCGCGTCAAGGTGGCGGTCAGGAGCCTGGTGAGCAAGGGGACCCTGCTGCAGACCAAGGGCACCGGCGCCTCCGGCTCCTTCAAGCTGAACAAGAATCAGACCGAGGAGAAGAAGCCCGTCAAGAAGGTCGCCGCTAAACCCAAGAAGCCGGCGGCCAAGAAACCCGTCGCGGCCAAGAAGCCCAAGACGGCGGTGAAGAAGACTGTGGCTGCCAAGAAGTCCCCCAAGAAGGTGAAGAAGCCCGCGGCGGCGCCCAAGAAGGCCAAGAGCCCCAAGAAGGTGAAGAAGCCCGCGGCGGCGCCCAAGAAGACCAAGAGCCCCAAGAAGGTGAAGGCAGCCAAGCCCAAGGGCAGCGGAGTGCAGTGCGTGGTGTCGAAGTTCCTCATGTACTTCCGGgcctga

Function

NR:

description
PREDICTED: histone H1-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11275 H1_5; histone H1/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006411 True 609 mRNA 0.65 2 4091688 4099718

Neighbor

gene id symbol gene type direction distance location
AMCG00006403 NA coding upstream 9522 4079626 ~ 4082166 (+)
AMCG00006408 NA coding upstream 167168 3922421 ~ 3924520 (+)
AMCG00006409 NA coding upstream 169760 3921234 ~ 3921928 (+)
AMCG00006410 NA coding upstream 170906 3919904 ~ 3920782 (+)
AMCG00006404 NA coding upstream 195230 3893263 ~ 3896458 (+)
AMCG00006420 NA coding downstream 34150 4133868 ~ 4134566 (+)
AMCG00006412 NA coding downstream 47986 4147704 ~ 4151691 (+)
AMCG00006423 NA coding downstream 79332 4179050 ~ 4185310 (+)
AMCG00006424 ino80e coding downstream 87875 4187593 ~ 4190086 (+)
AMCG00006432 NA coding downstream 154616 4254334 ~ 4266243 (+)
G109541 NA non-coding upstream 56380 3976728 ~ 4035308 (+)
G109532 NA non-coding upstream 147694 3943769 ~ 3943994 (+)
G109530 NA non-coding upstream 154786 3935980 ~ 3936902 (+)
G109523 LOC100846954 non-coding upstream 180640 3909961 ~ 3911048 (+)
G109396 NA non-coding upstream 317144 3772549 ~ 3774544 (+)
G109571 NA non-coding downstream 56246 4155964 ~ 4156206 (+)
G109572 NA non-coding downstream 56724 4156442 ~ 4156969 (+)
G109573 NA non-coding downstream 58018 4157736 ~ 4159191 (+)
G109575 NA non-coding downstream 68366 4168084 ~ 4169106 (+)
G109597 NA non-coding downstream 130516 4230234 ~ 4230484 (+)
G109538 NA other upstream 127692 3963597 ~ 3963996 (+)
AMCG00006393 ppp1r11,LOC107711309 other upstream 226956 3858934 ~ 3864732 (+)
AMCG00006387 NA other upstream 442777 3637743 ~ 3648911 (+)
AMCG00006379 NA other upstream 469892 3570039 ~ 3621796 (+)
G109570 NA other downstream 53098 4152816 ~ 4155749 (+)
AMCG00006413 NA other downstream 59805 4159523 ~ 4167952 (+)
G109714 NA other downstream 377216 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 425088 4524806 ~ 4527738 (+)
G109781 NA other downstream 925177 5024895 ~ 5025906 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC118956132 LOC106024139 coding NW_023493863.1 JAAXML020000503.1 12678 ~ 14138 (-)