AMCG00006412


Basic Information

Item Value
gene id AMCG00006412
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4147704 ~ 4151691 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006412
ATGACAGGGCGCCTGTCTGCCCAAGAGCTCGGAAGATCCTTCCAATTTCCCGCAGACGGCCTCCACCTCGGCCAAGATGCCGTCCCGCATTACTACAACGACGCGTTTGGGGCCTACAAAGCCGGGGATTTTCCCCAACTCATGCCTGAGGACCCCACCTCAAGGGGCGCTCATGGCCTGACCCGGGCTTGGTACCCCTTCCCTGGGGCCGAGGCCTGGTCCCACGGAGGAGGCGCCATGGTCTACGAGCCCCCGAAAACAGGGGAGCCGGTCAAGGCGGAGAAGGAAAGCTTGGTGTACCAGCCCTGGAATTCTTGCCTCTTACCTCAGGTCAGCTCAGGGACTGCAGGCCTCCTCCCCTGTAACAGCCCCGTTTCCTCCAGGACTGGAGGGGGTGCTGGGGAGCTGGTTCTCGGGGCACAACCTGGCCTGGAGACCCCCCTCAGCCCCCTGGATAGCAGCAGTGTGAGCCCCCCCACCAGCAACGAGAGTCCGGGGAGCGAGGAAGGGCGAGGAGCGTCGAGCGACAGCGGAGACGAGATGTTCAGTCAGACGACCATCTGCCGGTTTGAAGCCCTGCAGCTGAGCTTCAAGAACATGTGCAAGCTGAAGCCACTGCTGGACCGCTGGCTGAGAGAGGTGGACACCAACCAGAACCTGCAAGAGCTCTGTAACCTGGAACAAGCTGCCATCCAGGCCCGCAAGAGGAAGAGAACCAGCATCGAGAACAACGTGAAGGGGAGCCTGGAGACCTACTTCAGCAAGTGTCCCAAACCTTCTGCCCAGGAAATTGCCCAGATCGCAGACGACCTCAACTTGGAGAAGGACGTGGTGCGCGTGTGGTTCTGCAACCGGAGGCAGAAGGGCAAACGCAGCACCTTCCCGGGCATCGAGGAGTACGAGGGCGCCCAGTCCTTCAGCCCGTCCGCCGTGCCCTACCACAACCCCATGGGCTCCCACGGCTACAACAACTCTGCGTTTGCCACCCTATACATGCCCCAGTTCCACGACCCAGAGGCCTACTCCCAGCCAATGCCCCCTCCCCCGGCCATGGGGCACCCCATGCCCTCCAGCTGA

Function

GO: NA

KEGG:

id description
K09367 POU5F; POU domain transcription factor, class 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006412 True 1077 mRNA 0.62 4 4147704 4151691

Neighbor

gene id symbol gene type direction distance location
AMCG00006420 NA coding upstream 13138 4133868 ~ 4134566 (+)
AMCG00006411 LOC108414231,LOC106024139,LOC101061046,LOC101068669,LOC105419728,LOC105419724,LOC105419151,LOC105416979,LOC107747774,LOC105419136 coding upstream 47986 4091688 ~ 4099718 (+)
AMCG00006403 NA coding upstream 65538 4079626 ~ 4082166 (+)
AMCG00006408 NA coding upstream 223184 3922421 ~ 3924520 (+)
AMCG00006409 NA coding upstream 225776 3921234 ~ 3921928 (+)
AMCG00006423 NA coding downstream 27359 4179050 ~ 4185310 (+)
AMCG00006424 ino80e coding downstream 35902 4187593 ~ 4190086 (+)
AMCG00006432 NA coding downstream 102643 4254334 ~ 4266243 (+)
AMCG00006433 NA coding downstream 199961 4351652 ~ 4360196 (+)
AMCG00006438 NA coding downstream 290270 4441961 ~ 4450469 (+)
G109541 NA non-coding upstream 112396 3976728 ~ 4035308 (+)
G109532 NA non-coding upstream 203710 3943769 ~ 3943994 (+)
G109530 NA non-coding upstream 210802 3935980 ~ 3936902 (+)
G109523 LOC100846954 non-coding upstream 236656 3909961 ~ 3911048 (+)
G109396 NA non-coding upstream 373160 3772549 ~ 3774544 (+)
G109571 NA non-coding downstream 4273 4155964 ~ 4156206 (+)
G109572 NA non-coding downstream 4751 4156442 ~ 4156969 (+)
G109573 NA non-coding downstream 6045 4157736 ~ 4159191 (+)
G109575 NA non-coding downstream 16393 4168084 ~ 4169106 (+)
G109597 NA non-coding downstream 78543 4230234 ~ 4230484 (+)
G109538 NA other upstream 183708 3963597 ~ 3963996 (+)
AMCG00006393 ppp1r11,LOC107711309 other upstream 282972 3858934 ~ 3864732 (+)
AMCG00006387 NA other upstream 498793 3637743 ~ 3648911 (+)
AMCG00006379 NA other upstream 525908 3570039 ~ 3621796 (+)
G109570 NA other downstream 1125 4152816 ~ 4155749 (+)
AMCG00006413 NA other downstream 7832 4159523 ~ 4167952 (+)
G109714 NA other downstream 325243 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 373115 4524806 ~ 4527738 (+)
G109781 NA other downstream 873204 5024895 ~ 5025906 (+)

Expression


Co-expression Network