AMCG00006414


Basic Information

Item Value
gene id AMCG00006414
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4152816 ~ 4158123 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006414
TCAGAAGTTATGTTTTAAAGTGTAGCATCCCCACTTCCATTCTTGAAACCAATTCGCCCGGTCATCCCCACCGCCTGATCCTCCCCTCGGCGTGTCGGGGGTCCCCGCCCGGCATGTTATCGGAAGTACAGCCTTGCTTCCAGTTGCTGCGTATCGGACCGTCCTCGGGCTCCAGCTCGGACGCCGCCCGGGACCTGTACACCTTCAGGCCGGCCCTGCCCCGCTGCGTGTTCCGCCTGGGCCGGCGCGCCGAGCTGTGCGACGTGACGCTGCAGTCGGAGAGTCGGCCGGAGCTCATTTCGCGAATCCACGCCGAGCTGCAGGCGcagaaggaagaggaagagcaggATGAAGGATGGAGGGTGTATATGGTGGACCACAGCAGCCATGGCACCTGGGTGAACGATTCCCGTCTGAAGCGTGGCGAGCGCACGGAGCTCAGCGACGGCGACACCCTGACGTTTGGCGAGGGAGACCAGGCCGCCCCGGGCTCGGACGCCAGCCCCGAGTTCTACTTCCTCTTCCAGAAGGTGCTCGTACGGCCTCAGGAGTTCGACGCCATCACGGTGCCCAAGGCCTCGTCCTTCACCACCCTGAGCGGGCAGCCCTCCATGTTGCCCAGCGCCGGGCGGGTCAAGACGCTGTGCCGCACCCCCGAGCTCTCTGCGCCGCTCCCCTCGAACAAGGCCACTGTCATTCTCAACTCCATCGGGAGTATCAGTAAGCTGCAGGCTCGCCCGCTGACTTTCCACCCGGAGAAACCACCGCTGACCCGGCCGCGCGCCCTCTCGGCCACCTTCACCCCGCctcccgcctcctcctcctcctcttcctcctcctgctaCGCCGCGGGCCGCTCATCCAAGAGCAGACGCAAGTCAGCACACACTGTTCTGGCTGAGCTAGAGGATGAGGTCTCCGAGGAGGTCCGGCAGGCCAAGAGACGCCACTGCAAGTCAGAGTCGGACGCCCAGCCACCCCAGGCCGCCCCCTGTCACTCCCTGGTGTCCAGCTTTGTGCAACGCACCCCGAAAGGCCAGCGCAGGAGGCTGCCCAGCAGCGGGAACCTCTACAGCCCCCTGTTGATGTCCAGAGAGCACTGCGGTCGGCTGGGGCAGGACCAGAGCGACGGCAGCACCGCCCTGCTGCACAAACTGCACATGAGCTCTGTGGGGAAGCGCCGGGGGCGGCCCAGGAAGCACCCGCTGGTGTCGGGGCACCTGTACGTTGAGACCGAGGTGCGCCCGGCGGCCCTGGGGACCCCCCTTCGAGAGCTGGCCGAGCCCTGCGCCTCCCCGCGCTGCCGGCTGCCCCAGCAGGACACAGTGAAGTGGGTACAGTGTGACGACTGTGATGCCTGGTACCACGTGGACTGCGCCGGCTGGAGCGACGGCAGCGTGCAGGACGCGGCCGCCGAGTTCCACTGCGGCTGTCGCTGACGGGACCCCAATATCCCCCCTGAACTGGACTCGGGGTGAAGAGAGGGGCACCTTGGCCAGCGTGGTGTCTTTATTTCGAAGGGATTTTGTTTGAGCTTTGGGAGTCTTTGTTGCAGTGTGTCCAATAGAGTCTGGACTCTGTTACCTTtctgatacatttatatatctgtatttttaattttttaagatTTCGGAAACTTATTGGTCTCAGAGGCAGGATTTTCCCAGTTTAAGCACTACTGCCTGCACCTATTTCGGGAAACCTGCTGGAGAATGTGCTCTGTCTCAGCGTGCTTTTTAAATAACGCTTTCTCAGGTCTCGGAGGCCATGTGTCTTGTCCCTGAAGGAAGGGTGGGCTGGTgcaacacaatgtttttttttaatctgtgtggattgtttttagtttttataccTTACCAATCAGTCGGTCTCACCCCTATAATCCCAGTTCTTAATGTGGGACGGATGCAGGCAGTCAACACAAACTCttactatctctctctcacacacacacacacaccttcccaTTGTTTACCAATCAGTAATTATAAGTCCATTTGGGTTTGTTCTTTTACTATCGGCTCACAGGCCCACAGCGCTACGATGGAGCTCTCGCTGTGAAGGCTGCAGCACTCCCAGGTGTCCCAGTCAGACACAGGGGGGTGCTGTTCCCTTGAGTTACGTGCAAAGGAAAACCCTTGTTGACTGCAGCCCACGCAACCCCCAGCGGCCCTCAGACAGCTCCACTCTTGTGGGGAATCCCAGCCACAGGTGGCTATGACACAGTCCAGAATGGAGCCAATATGTCTGGACTATAGGGTTCAGATTGAAGCCAGCTTTGTCTGGACTATTTGGCTTGACCCATCTCCTATACCAATAACATTTGACCGACTCTCTGCCTTAATTTATGatgttactttttatatatatgaaaatgtgtttttttcaatcCTTCTGAGTTTTTTGTGGCTATTTTTTTCAAGGGTGGATggtgctttaaaatgaatgcgATTTAATCCTTCATTATGCCATAGACATTTCACCTCTCTCCCCCTGTTACTGAGGATCTCGCATCTACACAATGCACAGCAGAGTTACCCTCACCTGAGCACAGTGGCATCAGGGAGAAAGCCCATCGACTCCAAACCAGTGCTTTGCGATTATCTGTCTATAGATGGAGATCAGCAACACACACTTTTGTGAAAGGCTGCTTTGTGATTGATTTCAGAGGCTGGATAAATGGCTTCCAAGATAGTAAGTTGCGAAAGACAGGGAAAATAAGACCCTTCTGACTCATAGCAAGTGCGCTGAAAATCCCTGGGTCTCTCAAAAATATCTCATGGCATGAGGTCTGGCAACACTCTTGTGATCATTTAAATTCACTTGGTTAGTGGTTGTGTTTCCAGGGGCAGGAGGAAAGCAAAGAGGTTGCGTACCAGTTTTACTTCCCAGTTTTTGTTCCAGTAAGCTTGTTTTGTCAATCCTGCCCTCGGCACAGTACAGGTCTGCTCTTTCCTAGTAATGTACAATGTGTATTAATTGTCTTTATTGAAAATggagtaaaaaaatacatatgctaGAAGGActgggaaataaaacaacagaatgGTTGTCGGTGACATATTTTAAGGTTGTTGAAGATTTCTGATCCCAAGCTAATTCTGCTGAAGGGTTTTTGAAAGTTGCAGCAGCTTTTTGAAGGAAGGAGTCTGCCAATAGCTGTATAGTAACCTGAAAATgcaacatgtatgtatgtatgtatgtatgtatgtatatagatatatgtgtgtgtgtgtatgtgtatatatatatatatatatatatatatacacatatacacactggCTATGAATGCAGTCAGTTGACCTAAGCGTATGAGACCAGCAAGTACAATGAGAAGACTTTGACCCACTAAATATGGGCCCAACACAAATGTCTAACATCCCTCATGAGATAAACAGAGACTTGTAACAGCAGgatctccagccctggtccttcTACAGTACTGTTAGAAGGACCTGGAGATTATCCGAAATGGACCCAAGCATCTAAAAGGCTCTTCAGTGGGGGCGCTGAGTGGAATATGTAAATGAAGTACCTTTACAAAGTCTGGGTGTCATCTGCCTGTCTCTGCCGAGTAAAAGCTATACCACAAAGGACTGGAGCAACAGTAgtaaatactatataataaCGTATCGGCTTGCCTGCTTGTATGTGTAGTGCAGGTGATTCagaatatatctatatctgtccTGGGGATATTGATCACTGAGTCAAATATACGcgtcacatttatttatacggGTTAATCTCTTACCGATTCCATCATTTCCTCTCCCTGTCACTGGGGAGATTTTAAGCTAAGagacatgtatatttttaaatattttttgtcaatgaaccatgcatgtatgtgtcatgtttgtatgtatgtatatatttaataatactcTGGTTTTGTCCATCTGTCGCTTATCATTGCCGAACAATAAACGATGCAGGAAAAGTGGAAATCAAGGTGAATAGTATGTTGTTTTGTCAGGAAAGTATAATTAAGGATGGTTTTATGACCAACGATAAAATGTGGAAGGAGTGGG
>TU137273
catatacacactggCTATGAATGCAGTCAGTTGACCTAAGCGTATGAGACCAGCAAGTACAATGAGAAGACTTTGACCCACTAAATATGGGCCCAACACAAATGTCTAACATCCCTCATGAGATAAACAGAGACTTGTAACAGCAGgatctccagccctggtccttcTACAGTACTGTTAGAAGGACCTGGAGATTATCCGAAATGGACCCAAGCATCTAAAAGGCTCTTCAGTGGGGGCGCTGAGTGGAATATGTAAATGAAGTACCTTTACAAAGTCTGGGTGTCATCTGCCTGTCTCTGCCGAGTAAAAGCTATACCACAAAGGACTGGAGCAACAGTAgtaaatactatataataaCGTATCGGCTTGCCTGCTTGTATGTGTAGTGCAGGTGATTCagaatatatctatatctgtccTGGGGATATTGATCACTGAGTCAAATATACGcgtcacatttatttatacggGTTAATCTCTTACCGATTCCATCATTTCCTCTCCCTGTCACTGGGGAGATTTTAAGCTAAGagacatgtatatttttaaatattttttgtcaatgaaccatgcatgtatgtgtcatgtttgtatgtatgtatatatttaataatactcTGGTTTTGTCCATCTGTCGCTTATCATTGCCGAACAATAAACGATGCAGG

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006414 True 4037 mRNA 0.51 4 4152816 4158123
TU137273 False 671 lncRNA 0.40 1 4152911 4153581

Neighbor

gene id symbol gene type direction distance location
AMCG00006421 NA coding downstream 11182 4134610 ~ 4141634 (-)
AMCG00006422 NA coding downstream 20069 4131968 ~ 4132747 (-)
AMCG00006418 NA coding downstream 21959 4125812 ~ 4130857 (-)
AMCG00006417 vars2,vars,LOC107379499 coding downstream 29179 4109975 ~ 4123637 (-)
AMCG00006416 LOC104947235,LOC104953484 coding downstream 44111 4099447 ~ 4108705 (-)
AMCG00006431 NA coding upstream 31726 4189849 ~ 4193150 (-)
AMCG00006425 NA coding upstream 37197 4195320 ~ 4197795 (-)
AMCG00006426 NA coding upstream 42638 4200761 ~ 4217871 (-)
AMCG00006430 NA coding upstream 63955 4222078 ~ 4230525 (-)
AMCG00006427 NA coding upstream 75541 4233664 ~ 4242559 (-)
G109628 NA non-coding downstream 13547 4139034 ~ 4139269 (-)
G109619 NA non-coding downstream 69364 4081807 ~ 4083452 (-)
G109609 NA non-coding downstream 117485 3976709 ~ 4035331 (-)
G109540 NA non-coding downstream 176199 3976203 ~ 3976617 (-)
G109514 NA non-coding downstream 285775 3866720 ~ 3867041 (-)
G109632 NA non-coding upstream 5859 4163982 ~ 4164557 (-)
G109634 NA non-coding upstream 8205 4166328 ~ 4166589 (-)
G109635 NA non-coding upstream 8828 4166951 ~ 4167239 (-)
G109616 NA non-coding upstream 108704 4266827 ~ 4268470 (-)
G109689 NA non-coding upstream 150050 4308173 ~ 4311951 (-)
AMCG00006398 NA other downstream 337299 3730042 ~ 3815517 (-)
AMCG00006390 NA other downstream 424297 3698885 ~ 3728519 (-)
AMCG00006354 NA other downstream 1258282 2888486 ~ 2894534 (-)
AMCG00006344 NA other downstream 1565970 2581337 ~ 2586846 (-)
AMCG00006328 NA other downstream 1822825 2324131 ~ 2329991 (-)
G109633 NA other upstream 6811 4164934 ~ 4165600 (-)
AMCG00006415 NA other upstream 9927 4168050 ~ 4177052 (-)
AMCG00006429 NA other upstream 112293 4270416 ~ 4277155 (-)
AMCG00006476 NA other upstream 1419347 5577470 ~ 5603733 (-)
AMCG00006491 NA other upstream 1855981 6014104 ~ 6042924 (-)

Expression


Co-expression Network